RetrogeneDB ID: | retro_vpac_308 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_622:455478..455909(-) | ||
Located in intron of: | ENSVPAG00000003994 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EMC3 | ||
Ensembl ID: | ENSVPAG00000003247 | ||
Aliases: | None | ||
Description: | ER membrane protein complex subunit 3 [Source:HGNC Symbol;Acc:23999] |
Percent Identity: | 69.33 % |
Parental protein coverage: | 56.32 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | VLIRSRVLRENGKYIPKQSFLTRKYYFNNSEDGFFKKTKRKVVPPSP-MTDPTMLTDMMKGNVTN-VLPM |
VLI.S.VL.ENG.YIPKQS.LT..YYFNN.EDGFF.....K.....P..TDPTMLTD.MK.NVT..VLPM | |
Retrocopy | VLIQSIVLKENGNYIPKQS-LT*NYYFNNPEDGFFXXXXXKGKTVPP>LTDPTMLTDTMKANVTK<VLPM |
Parental | ILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASW-VSSASWYFLNVFGLRSIYSLILGQD |
ILIG.WINMTFSGFVT.K..F.L...FKPMLQQGIELLT..ASW.VS..SWYF..V.G..SIYSL.LGQ. | |
Retrocopy | ILIGRWINMTFSGFVT-KSYF*L-IYFKPMLQQGIELLTIAASW<VSFTSWYFCYVLGFQSIYSLVLGQG |
Parental | NAADQSRMMQ |
NA.DQS.MMQ | |
Retrocopy | NANDQSGMMQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000005202 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000037305 | 1 retrocopy | |
Equus caballus | ENSECAG00000024410 | 1 retrocopy | |
Felis catus | ENSFCAG00000024898 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000002333 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000017149 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000012615 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000007554 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000003247 | 2 retrocopies |
retro_vpac_308 , retro_vpac_461,
|