RetrogeneDB ID: | retro_vpac_394 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_15501:1229..1613(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL21 | ||
Ensembl ID: | ENSVPAG00000006206 | ||
Aliases: | None | ||
Description: | ribosomal protein L21 [Source:HGNC Symbol;Acc:10313] |
Percent Identity: | 82.03 % |
Parental protein coverage: | 80. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGTGTVQKGMPHKCYHGKTGRVYNVTQHAVGI |
KGKRRGTR.MFSRPFRKHGVVPLATY..IYKK.D.VDIKGTGTVQKGMP.KCYHGKTGRVYNVTQHA.GI | |
Retrocopy | KGKRRGTRHMFSRPFRKHGVVPLATYV*IYKKADTVDIKGTGTVQKGMPRKCYHGKTGRVYNVTQHAAGI |
Parental | IVNKQVKGKILAKRINVRVEHIKHSKSRDSFLKRVRENDQKKKEAKEKGTWVQLKRQP |
...KQVKG.ILAKRI.VRVEHIK..KS.DSF.K.V.E.D.KKKEAKE.GTWVQL.R.P | |
Retrocopy | VISKQVKGRILAKRIKVRVEHIKPFKSQDSFQKQVKEKDHKKKEAKENGTWVQLERHP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |