Parental gene:

ENSOCUG00000002506

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:GL018735:316888..318663(+)


>ENSOCUG00000002506
ATGACGAACACAAAGGGAAAGAGGCGAGGTACCCGGTACATGTTCTCCAGGCCTTTCAGAAAACATGGAGTTGTTCCTTT
GGCCACATACATGCGCATTTACAAGAAAGGTGACATTGTGGACATCAAGGGAATGGGTACTGTTCAAAAAGGAATGCCCC
ATAAATGTTACCATGGAAAAACTGGAAGAGTCTACAATGTTACCCAGCATGCTGTTGGCATTGTTGTAAACAAACAAGTG
AAAGGCAAGATTCTTGCCAAGAGAATAAATGTGCGTATTGAACACATTAAGCACTCTAAGAGCAGAGATAGCTTCTTGAA
ACGTGTGAAGGAAAATGATCAGAAGAAGAAGGAAGCCAAAGAGAAGGGTACCTGGGTTCAACTAAAGCGTCAGCCTGCTC
CACCCAGAGAAGCCCACTTTGTCAGAACCAATGGAAAGGAGCCTGAGTTGCTGGAACCCATTCCTTATGAATTCATGGCA
TGA

Library Parental gene expression (RPM)
SRP017611_liver 24 .90 RPM
SRP017611_kidney 210 .31 RPM
SRP017611_brain 87 .20 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000003169 possible_ortholog 1 retrogene
Bos taurus ENSBTAG00000001648 possible_ortholog 5 retrogenes
Callithrix jacchus ENSCJAG00000019355 possible_ortholog 1 retrogene
Cavia porcellus ENSCPOG00000008784 possible_ortholog 3 retrogenes
Equus caballus ENSECAG00000010661 ortholog_one2one 5 retrogenes
Felis catus ENSFCAG00000006750 ortholog_one2many 1 retrogene
Latimeria chalumnae ENSLACG00000012678 ortholog_one2many 1 retrogene
Loxodonta africana ENSLAFG00000003677 possible_ortholog 11 retrogenes
Microcebus murinus ENSMICG00000014754 possible_ortholog 54 retrogenes
Myotis lucifugus ENSMLUG00000010093 possible_ortholog 46 retrogenes
Macaca mulatta ENSMMUG00000023368 ortholog_one2many 2 retrogenes
Monodelphis domestica ENSMODG00000008923 ortholog_many2many 1 retrogene
Mustela putorius furo ENSMPUG00000009353 ortholog_one2one 23 retrogenes
Mus musculus ENSMUSG00000041453 possible_ortholog 101 retrogenes
retro_mmus_1012, retro_mmus_1046, retro_mmus_1057, retro_mmus_1083, retro_mmus_1123, retro_mmus_1199, retro_mmus_1287, retro_mmus_1354, retro_mmus_1461, retro_mmus_1475, retro_mmus_1529, retro_mmus_1561, retro_mmus_1572, retro_mmus_1596, retro_mmus_1617, retro_mmus_1641, retro_mmus_1644, retro_mmus_17, retro_mmus_1714, retro_mmus_1739, retro_mmus_1762, retro_mmus_1797, retro_mmus_1848, retro_mmus_1860, retro_mmus_1862, retro_mmus_1875, retro_mmus_1897, retro_mmus_1915, retro_mmus_1931, retro_mmus_1936, retro_mmus_1994, retro_mmus_2042, retro_mmus_2049, retro_mmus_2101, retro_mmus_2130, retro_mmus_2176, retro_mmus_2179, retro_mmus_2185, retro_mmus_2214, retro_mmus_2233, retro_mmus_2237, retro_mmus_2238, retro_mmus_2279, retro_mmus_2309, retro_mmus_2312, retro_mmus_2335, retro_mmus_2344, retro_mmus_2395, retro_mmus_2447, retro_mmus_2517, retro_mmus_2567, retro_mmus_2585, retro_mmus_2598, retro_mmus_266, retro_mmus_2662, retro_mmus_2698, retro_mmus_2707, retro_mmus_2778, retro_mmus_2808, retro_mmus_2853, retro_mmus_2874, retro_mmus_2945, retro_mmus_2980, retro_mmus_3035, retro_mmus_3055, retro_mmus_3085, retro_mmus_3103, retro_mmus_3112, retro_mmus_3220, retro_mmus_3252, retro_mmus_3261, retro_mmus_3295, retro_mmus_3318, retro_mmus_3328, retro_mmus_333, retro_mmus_3341, retro_mmus_3446, retro_mmus_3545, retro_mmus_3581, retro_mmus_3712, retro_mmus_397, retro_mmus_400, retro_mmus_401, retro_mmus_598, retro_mmus_601, retro_mmus_606, retro_mmus_663, retro_mmus_734, retro_mmus_735, retro_mmus_758, retro_mmus_782, retro_mmus_806, retro_mmus_835, retro_mmus_862, retro_mmus_883, retro_mmus_918, retro_mmus_932, retro_mmus_940, retro_mmus_957, retro_mmus_993, retro_mmus_998,
Nomascus leucogenys ENSNLEG00000000327 possible_ortholog 6 retrogenes
Pongo abelii ENSPPYG00000005233 ortholog_one2one 7 retrogenes
Pteropus vampyrus ENSPVAG00000000077 possible_ortholog 82 retrogenes
Rattus norvegicus ENSRNOG00000000957 possible_ortholog 13 retrogenes
Sarcophilus harrisii ENSSHAG00000000845 ortholog_one2many 11 retrogenes
Sus scrofa ENSSSCG00000009303 possible_ortholog 9 retrogenes
Vicugna pacos ENSVPAG00000006206 possible_ortholog 13 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_86 96.69 94.38
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2. retro_ocun_104 100.00 100.00
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3. retro_ocun_122 100.00 100.00
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4. retro_ocun_125 95.62 100.00
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5. retro_ocun_159 94.38 100.00
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6. retro_ocun_163 100.00 100.00
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7. retro_ocun_186 95.00 100.00
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8. retro_ocun_198 96.88 100.00
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9. retro_ocun_209 98.75 100.00
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10. retro_ocun_232 96.88 100.00
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Download FASTA sequences of all ENSOCUG00000002506 retrocopies