RetrogeneDB ID: | retro_vpac_489 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_24156:3934..4434(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | U2AF1 | ||
Ensembl ID: | ENSVPAG00000002856 | ||
Aliases: | None | ||
Description: | U2 small nuclear RNA auxiliary factor 1 [Source:HGNC Symbol;Acc:12453] |
Percent Identity: | 92.44 % |
Parental protein coverage: | 76.58 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | AVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNG |
AVSDVEMQEHYDEFFEE.FTEME.KYGEV.EMNVCDNLG.HLVGNVYVKFRRE.DAEKAVIDLNNRW.NG | |
Retrocopy | AVSDVEMQEHYDEFFEEIFTEME-KYGEVKEMNVCDNLGEHLVGNVYVKFRREGDAEKAVIDLNNRWLNG |
Parental | QPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRE-YGRRRKKHRSRSRSRERRSRSR |
QPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRE.YGRRRKKHRSRSRSRERRSRSR | |
Retrocopy | QPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRELRRELYGRRRKKHRSRSRSRERRSRSR |
Parental | D-RGRGGGGGGGGGGRERDRRRSRDRERSGRF |
D.RGRGGGGGGG...RERDRRRSRD.ERS.RF | |
Retrocopy | D<RGRGGGGGGG---RERDRRRSRDGERSRRF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Microcebus murinus | ENSMICG00000013835 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016504 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000013952 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000000453 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000002856 | 1 retrocopy |
retro_vpac_489 ,
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