Parental gene: | U2AF1, ENSPTRG00000013952 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 21:29142971..29157508(-) |
>ENSPTRG00000013952
ATGGCGGAGTATCTGGCCTCCATCTTCGGCACCGAGAAAGACAAAGTCAACTGTTCATTTTATTTCAAAATTGGAGCATG
TCGTCATGGAGACAGGTGCTCTCGGTTGCACAATAAACCGACGTTTAGCCAGACCATCTTGATTCAAAACATCTATCGTA
ATCCCCAAAACAGTGCACAGACGGCTGACGGCTCACACTGTGCCGTGAGCGATGTGGAGATGCAGGAACACTATGATGAG
TTTTTTGAGGAGGTTTTTACAGAAATGGAGGAGAAGTATGGGGAAGTAGAGGAGATGAACGTCTGTGACAACCTGGGAGA
CCACCTGGTGGGGAACGTGTACGTCAAGTTTCGCCGTGAGGAAGATGCGGAAAAGGCTGTGATTGACTTGAATAACCGTT
GGTTTAATGGACAGCCGATCCACGCCGAGCTGTCACCCGTGACGGACTTCAGAGAAGCCTGCTGCCGTCAGTATGAGATG
GGAGAATGCACACGAGGCGGCTTCTGCAACTTCATGCATTTGAAGCCCATTTCCAGAGAGCTGCGGCGGGAGCTGTATGG
GCGCCGTCGCAAGAAGCATAGATCAAGATCCCGATCCCGGGAGCGTCGTTCTCGGTCTAGAGACCGTGGTCGTGGCGGTG
GCGGTGGCGGTGGTGGAGGCGGCGGCGGACGGGAGCGTGACAGGAGGCGGTCGAGAGATCGTGAAAGATCTGGGCGATTC
TGA
ATGGCGGAGTATCTGGCCTCCATCTTCGGCACCGAGAAAGACAAAGTCAACTGTTCATTTTATTTCAAAATTGGAGCATG
TCGTCATGGAGACAGGTGCTCTCGGTTGCACAATAAACCGACGTTTAGCCAGACCATCTTGATTCAAAACATCTATCGTA
ATCCCCAAAACAGTGCACAGACGGCTGACGGCTCACACTGTGCCGTGAGCGATGTGGAGATGCAGGAACACTATGATGAG
TTTTTTGAGGAGGTTTTTACAGAAATGGAGGAGAAGTATGGGGAAGTAGAGGAGATGAACGTCTGTGACAACCTGGGAGA
CCACCTGGTGGGGAACGTGTACGTCAAGTTTCGCCGTGAGGAAGATGCGGAAAAGGCTGTGATTGACTTGAATAACCGTT
GGTTTAATGGACAGCCGATCCACGCCGAGCTGTCACCCGTGACGGACTTCAGAGAAGCCTGCTGCCGTCAGTATGAGATG
GGAGAATGCACACGAGGCGGCTTCTGCAACTTCATGCATTTGAAGCCCATTTCCAGAGAGCTGCGGCGGGAGCTGTATGG
GCGCCGTCGCAAGAAGCATAGATCAAGATCCCGATCCCGGGAGCGTCGTTCTCGGTCTAGAGACCGTGGTCGTGGCGGTG
GCGGTGGCGGTGGTGGAGGCGGCGGCGGACGGGAGCGTGACAGGAGGCGGTCGAGAGATCGTGAAAGATCTGGGCGATTC
TGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 30 .92 RPM |
| SRP007412_cerebellum | 72 .49 RPM |
| SRP007412_heart | 31 .59 RPM |
| SRP007412_kidney | 52 .46 RPM |
| SRP007412_liver | 83 .34 RPM |
| SRP007412_testis | 79 .78 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Microcebus murinus | ENSMICG00000013835 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000016504 | possible_ortholog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000021693 | within_species_paralog | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000000453 | ortholog_one2one | 2 retrogenes | |
| Vicugna pacos | ENSVPAG00000002856 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_549 | 82.26 | 51.67 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_1000 | 80.66 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000013952 retrocopies