Detailed information on CNT0020781


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q7XA40|RGA3_SOLBU, E-value = 1e-57

BLAST vs NONCODE (A. thaliana): nothing found

Potentially orthologous lncRNAs
:
CNT0042615 in A. thaliana

Most similar lncRNAs
:
CNT0003560, E-value = 2e-12 (V. vinifera)
CNT0042615, E-value = 9e-24 (A. thaliana)
CNT0033040, E-value = 9e-24 (P. patens)
CNT0000589, E-value = 9e-24 (G. max)
CNT0021918, E-value = 2e-24 (A. trichopoda)
CNT0027958, E-value = 4e-23 (O. sativa)
CNT0008755, E-value = 2e-09 (S. tuberosum)
CNT0040165, E-value = 5e-16 (S. moellendorffii)

Expression of CNT0020781

Peptides detected in this lncRNA

>peptide 1 (424 aa)
MMHHLVGSNFKQLKDVAYAVDDVVDEYQLKAERNDASGDGDFVSRYMRRKPESFIFQCKAAKKIKAIKKRFAAIVKQRADINIIATSLTGSGHSISHMKK
TAVGLPSVPTMDATLILGREMEKHQLISKLTETNDQQKTMIVSIVGLGGSGKTTLAKLVFNDGTTIAKHFKVRLWVHVSQEFGFESIVGKLFEAIAHGKS
ESHNLQHMVRRISDELTEKVFLLVLDDVWTKDRMELEQFMVLVRSGASGSRILLTTRNSDVAEAVESSYLINLPLLSLSDSWQLFIQSFGTTVEGLDREF
LDVGNAIVNKCGGVPLAIKVIAGVLHDKKRIQEWQAIRDSNLFDAEGKERRVSACLRLSYLNLPSHLKQCFTICSLFPKGHKIDKERLIDQWIAHDMFAS
ADAVDYLEYTGYECFSSLVQMSFL*

>peptide 2 (33 aa)
MLLITWSTLDMSVLVLLCKCLFCRMWKKIIMGE*

>peptide 3 (97 aa)
MARRLPAGVPVGRNGRRQPHHPQPPPLPLRRCPGLAGASASCADLRLGRPSQGLRWKFPRYVRAPWELMESPELPPAARGIPTRIHPTILKAVHRVA*

>peptide 4 (40 aa)
MTSTALSSLRRQKNVSRTWGRTASYASTGLKHFSAGHVST*

>peptide 5 (39 aa)
MCHKSLVLKVLLGSCLKLLPMASLKAITCSTWSEEYQTS*

>peptide 6 (53 aa)
MQPFHQDKICFMSSEVCHIPPFFSYANIATWLSGTIIRGTPSTTKHGWRTSLK*

>peptide 7 (42 aa)
MLATVMTQYLEAQCRMRDICVVSPWNPCLWQQFPMPYSRRNI*

>peptide 8 (36 aa)
MAQQGAAPRRLSDQSELTTPAPLRGTCRALASHLGQ*

>peptide 9 (30 aa)
MTRNGYKSGRPLETVIYSMLRAKSVEYLHV*

>peptide 10 (862 aa)
MDNPQQPLQPGTVLRFGSLEFMSLDGSYDMILLPPQHDSNDGRRVARRRRTRRQPLPRAEEGHSGLPRHPPRQRRRRRGNHGPARGGTSSAVGPERIDDA
GTPAGDMSGVSLAPGTMTGVASRQRANPRRTDDASTLARDLSGISLAPETATRFISATTSPPSTNQEVPSVFHPVPFRFSFDLPGSPTSASTFARTYPDL
PGYHMWSTWDLLTVASTSEPAGPEEEDDPDFSMDFSELCDPRAMRDFMSACDHCLSGDSNDGHGLDDEGYDPTRECFHIDQEEHDGDNHLGMPRNNNAPA
PASRVEIPRELAEAQVPAGGQGTQLEQLREMQAKLDEETERLMQLRQNLEQEWAGRALAGRAHHRARDVQRRIIEDAGAGLPPIFNGASQNLAAAAMLLR
TMPEPSTTEGRRIRGELKGLLENAAVQQAESSASRRRGCPSEHRDEPSRHVREASVHTEPTGDRTPAVLDRLDNEQHHLDRRARLEEKVRRGYHPRRGGR
YDSEEDRSPSPEPPGPRVFSRAIRRAPFPARFRAPTTIAKYSGETKPELWLADYRLACQLGGTDDDNLIIRNLPLFLSDAARAWLEHLPPAQIFDWDDLV
KAFAGNFQGTYVRPGNSWNLRSCRQQPGESLREYIRRFSKQCTELPNITDSDVIGAFLAGTTCRDLVSKLGRKTPTKASELMDIATKFASGQETVEAIFR
KDKQPQGRQKEDVPEASVQRGMKKKSKKKAQAKRNAVEADLVAAVERRNPRRPPGGANVFDKMLKESCPYHKGPVKHTLEECDMLRRYFNKAGPLAEDGK
DQGNNNKEGDKEEEFPEVHNCFMIYGGQVANASARRRKQERREVCSVKVATERELGLHLVPI*

>peptide 11 (57 aa)
MASSSAAYTSMFQLQALLDGVQCNLFIKIKFASCPAKYVTFPLFFLMQILLHGCRVP*

>peptide 12 (69 aa)
MHPVQTTVPTTGVRLTTVSHRLSRDRPRAQQEVPPRPTPASASEGIVATPDPGLGLNLSLGRRSSPRPT*

>peptide 13 (115 aa)
MLEQRKDSQGWGGGHKHPLPACSLLISSHLTSPCLSPLSSSPAHKFPGLACIFERLNSAAHISCNKLCLAYTSSRVFQDEQTDLSSRDLWYRISLQPLRC
SKRWNFWHKGHFTER*

>peptide 14 (80 aa)
MLRAFPRHAEKANSDGLLEGKNLLSTARDLSRDLGSVPPLTRLVTPTTSTPVQDNISLIFSLVFHLASIHPSRDTQHKIH*

>peptide 15 (72 aa)
MHDLVHDLAHSILKDEILVTRFPERWERGTGTRNTVRLLKQHGTLRGIQLIHVHSMRGTCSQRFRNAVRERL*

>peptide 16 (41 aa)
MMLLVMVILYPDICVENQNRSYFSVRQLRRSRQSRRDLLQS*

>peptide 17 (50 aa)
MATALTTKVTTQLASASTLIRRSTMETTTSACQETTTPLHLRLASRSRGS*

>peptide 18 (85 aa)
MTGVEAAAISAVASGILKIVGNKLAPLVIRKYSSIVGVEKDLQKLQVLVEDINSWLESAGYQAFGDDASLSWFKLQTVERCCLCC*

>peptide 19 (119 aa)
GRPSGGPMLRAGPDGCYTVFTGLVQFGKEKNSSISSVFVFVCNRQNISLDLEVMANCWQQRAAKPRDRERAMAMADCHDAGRARLGARESPVTFRKGDDL
GKVVASSLHSPIPVNSRTS*

>peptide 20 (59 aa)
MRQVRRTWTWNGWHTMQVRWTWTWKGWHLKQVRWTWTLSGCHLRQVRWTLSWSRLYLMV*

>peptide 21 (841 aa)
MSNPFLFLRAPCLSPQLRDSSTARLLFSQLIHVHHEISLVVPKEGTSLTESYRYFSLTKQSRIVPSKRPFGKARAIYVSNSDDTIFGSTMQNARHLRSIT
MESMFVATIPNAIFQAKHLKYLEISRLRCEVLPEAISNFWTLQALHLASSDLLDLPESFGKLTRLRTLNLSKSEKFKRLPDSIGDCQMMSTIDLCGCNSL
TVLPDTIGRIERLRVLRLSYTKIERLPSNIITLRNLECLDLCTCQELVELPEGIGNLDRLQVLNLKGCKSLGGMPVGVGRLSRLQKLGLFVVGDSEKFAG
ISELANVPRISEELSIRGIPHGMDPDDAQMACLQQKTSLQSLDLEWMAHKACEVDLEWMAHEAGEANMDLERMAHDAGEVDLDLERMALEAGEVDLDSEW
MPLEAGEVDTELEQAVLDGLEPPSQIKELKINGYSGSQHACWMQNQVSGRRGPQELVHFPFLRVVKLSDFPNLKHLDGLVELPCLEDLELRAMPCLESMS
GGPFPSLSRLELDTLPSLGEVWLVAETTILPSGEGAGHNVHDTGTPGSGRQVRVGGRLSYLFIQDCPRLRLRPHMPSSLESLHLSESSEQLLQLPADQCL
GSSSSYSNFSHLKKLGLWGMTGLGSGRRWELLQHMTALESLEINSSLVLRELPEGLRSLTCLQSLIVFACSDLLVLPEWIGELASLQQLCIWTCDVLSSL
PQSLGQLTSLQMLSIEACYELHRLPERIGELCSLRKLRIRDCPRLACLPQMSGLTSLQELLISDCPGLTSLPQGMMSGLASLEKLIVSDCPGIKFLPQDI
KGLTTLMELRIRRCPDLERRCETGKGEDWHLISHIPNLRIW*

>peptide 22 (127 aa)
MPGVFLFLLQFQPPEEAWAMGDDRTRIWTPVGASATHDGARVIGDQLLSGAKRAARGVAEPHVPPVTNRVRVLRSSRAARVDRGACVPAAAVHLDLRCLK
QPSPVTGAAHIPPDALHRSMLRASPAA*

>peptide 23 (80 aa)
MTPAPLQGTCRALVSHPRQRHVSSPLQLHHRPPTRRYHRFSILFLLDSASICQAAPLRLALSQGHILTSRGIICGQPGTY*

Sequence

>CNT0020781
GGGGCGGCCGTCTGGTGGCCCTATGCTAAGAGCCGGTCCTGATGGCTGCTATACTGTATTCACAGGCCTAGTGCAGTTTGGGAAAGAGAAAAATTCTAGT
ATCAGCTCAGTGTTTGTCTTCGTTTGCAACAGGCAAAACATTTCTTTGGATCTAGAAGTCATGGCTAACTGTTGGCAGCAGCGAGCGGCTAAGCCCCGCG
ACCGCGAGCGTGCAATGGCGATGGCGGATTGTCACGATGCCGGAAGAGCAAGACTCGGCGCGAGGGAAAGCCCAGTTACATTTAGGAAGGGGGATGACTT
GGGTAAGGTGGTAGCCTCATCCTTGCATTCACCAATTCCTGTAAACTCCCGAACTTCGTGAGAGGAGTGAGCTCCGGCAGCGGTGGTGGTGCTCGTCATC
AATCCAAACAGATCGATTTCGGTTGGAGGAGTGCGCGCCACCCGTTCGACGAAAGTCGTCATCGGAAGAGCAACGTGCGCGCGTACGTCAACGGCTCAAA
AGCGCGTGAGTCGCCTTCCCATTCGTTTGTCAAAGCCCACAGTTTGTCAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAAGTTGCTGTCCGCGAGAGACACGTTTCCAGCTCAGCAGTCAGCATGCTCGAGCAAAGAAAAGATTCTCAAGGGTGGGGCGGTGGGCACAAACAC
CCTCTGCCTGCCTGCAGCCTGCTCATATCATCTCATCTGACATCTCCATGTTTATCCCCTCTCTCCAGTTCTCCAGCTCACAAGTTTCCTGGCCTCGCTT
GTATCTTTGAGCGCCTCAACTCTGCAGCACATATATCCTGTAATAAGCTCTGTCTTGCATACACTAGCTCTAGAGTCTTTCAAGATGAGCAAACAGATCT
GAGCTCCAGGGACTTGTGGTACAGGATCTCTCTACAGCCTCTTCGGTGCTCGAAGCGGTGGAACTTCTGGCACAAGGGACACTTTACAGAAAGATGACTG
GTGTCGAAGCTGCCGCCATATCTGCTGTAGCATCTGGAATATTAAAGATTGTGGGCAACAAGTTGGCACCACTGGTTATAAGAAAGTATAGCTCAATCGT
GGGTGTGGAAAAAGATCTCCAGAAGCTCCAGGTCCTAGTTGAGGATATAAACTCTTGGCTAGAAAGCGCGGGATATCAAGCTTTTGGTGATGATGCATCA
CTTAGTTGGTTCAAACTTCAAACAGTTGAAAGATGTTGCTTATGCTGTTGACGATGTTGTCGATGAGTACCAGCTGAAGGCCGAGAGAAATGATGCTTCT
GGTGATGGTGATTTTGTATCCAGATATATGCGTAGAAAACCAGAATCGTTCATATTTCAGTGTAAGGCAGCTAAGAAGATCAAGGCAATCAAGAAGAGAT
TTGCTGCAATCGTGAAGCAAAGAGCCGACATCAATATAATAGCTACTAGTTTAACTGGTAGTGGTCATTCTATTTCCCATATGAAAAAGACAGCTGTGGG
GCTGCCATCAGTGCCTACCATGGATGCAACATTAATACTCGGAAGAGAAATGGAGAAGCACCAGCTAATATCTAAATTAACTGAAACCAATGACCAACAA
AAAACCATGATAGTTTCCATCGTTGGACTTGGTGGATCTGGCAAAACTACCTTGGCTAAACTTGTTTTTAACGATGGTACCACTATAGCAAAGCATTTTA
AAGTTAGACTATGGGTTCATGTGTCACAAGAGTTTGGTTTTGAAAGTATTGTTGGGAAGCTGTTTGAAGCTATTGCCCATGGCAAGTCTGAAAGCCATAA
CTTGCAGCACATGGTCAGAAGAATATCAGACGAGTTGACTGAAAAGGTGTTCTTGCTTGTACTGGATGATGTCTGGACTAAGGACCGAATGGAGTTGGAA
CAATTTATGGTACTTGTGAGGAGCGGTGCATCTGGAAGCAGGATTTTACTAACTACTCGCAATAGCGATGTTGCTGAAGCGGTGGAATCTTCATATCTGA
TCAACCTGCCACTCTTGTCTTTGTCTGACAGCTGGCAACTATTTATTCAAAGCTTTGGTACGACGGTGGAAGGTTTGGACAGAGAATTCCTAGATGTTGG
GAATGCCATTGTAAACAAATGTGGTGGGGTGCCACTAGCAATTAAAGTAATTGCAGGTGTCCTCCATGACAAGAAACGGATACAAGAGTGGCAGGCCATT
AGAGACAGTAATCTATTCGATGCTGAGGGCAAAGAGCGTAGAGTATCTGCATGTTTGAGGTTGAGCTATCTGAACTTGCCCTCTCATCTGAAGCAGTGCT
TCACGATTTGTTCACTGTTTCCTAAAGGTCACAAGATTGACAAGGAACGTTTGATTGACCAATGGATTGCTCACGACATGTTCGCTAGTGCGGATGCTGT
TGATTACTTGGAGTACACTGGATATGAGTGTTTTAGTTCTCTTGTGCAAATGTCTTTTTTGTAGGATGTGGAAGAAAATTATTATGGGAGAGTGACATGC
AAGATGCACGATTTGGTTCATGATCTAGCCCACTCCATACTTAAAGATGAAATCTTAGTGACAAGGTTCCCGGAACGTTGGGAACGAGGAACGGGAACGA
GGAACACGGTACGTCTGTTAAAGCAACATGGAACGTTGAGGGGTATACAGCTGATCCACGTTCATTCGATGCGTGGAACGTGTTCCCAACGATTTAGGAA
CGCAGTTAGGGAACGATTGTAATGAAACAGGGAACACAGTTCTATTTAAATAGGAGGCAGTACGCGGCTCCCTGCCTAATCACTTATTACGCGCTGCATG
TCTAATCCCTTCCTCTTCTTACGGGCTCCATGCCTATCCCCTCAGCTGCGCGACTCCTCCACTGCGCGACTGCTCTTCTCCCAGCTGATCCACGTTCATC
ATGAAATTTCACTTGTTGTGCCGAAGGAGGGAACCAGTTTGACAGAGAGCTACAGATACTTTTCTCTAACTAAGCAGTCAAGAATTGTTCCATCCAAACG
TCCTTTTGGAAAGGCACGTGCTATCTATGTTAGCAACAGTGATGACACAATATTTGGAAGCACAATGCAGAATGCGAGACATCTGCGTAGTATCACCATG
GAATCCATGTTTGTGGCAACAATTCCCAATGCCATATTCCAGGCGAAACATTTGAAATATCTTGAGATTTCGAGGCTAAGATGTGAAGTACTCCCGGAAG
CCATTTCAAATTTCTGGACCCTACAAGCTCTTCACCTGGCATCCAGTGATCTCCTTGATTTGCCTGAAAGCTTTGGTAAGCTAACTAGGTTAAGAACATT
GAACCTATCCAAGTCTGAGAAGTTCAAGCGTTTACCAGACTCCATCGGCGACTGTCAAATGATGTCAACCATTGATCTTTGCGGTTGTAACAGTCTTACA
GTGTTGCCAGACACTATTGGCAGAATTGAAAGGCTAAGAGTTTTGAGATTAAGTTACACAAAGATCGAGAGGCTTCCATCAAACATCATAACATTGAGAA
ATCTTGAGTGTTTGGATCTCTGCACGTGTCAAGAGCTGGTAGAGTTGCCCGAAGGCATTGGGAATCTAGATAGGCTTCAAGTCTTGAACCTCAAAGGTTG
TAAATCATTGGGAGGCATGCCTGTAGGTGTTGGGCGGCTCAGTCGGCTCCAAAAGCTGGGCTTGTTTGTTGTAGGTGACAGTGAAAAGTTTGCAGGAATC
TCAGAGCTTGCAAATGTACCTCGGATTAGTGAGGAACTGAGTATTAGAGGTATTCCACATGGTATGGACCCAGACGATGCACAGATGGCATGCTTGCAAC
AAAAAACAAGCTTACAGAGCTTGGACCTAGAATGGATGGCACATAAGGCATGTGAGGTGGACCTGGAATGGATGGCACATGAGGCAGGTGAGGCGAACAT
GGACTTGGAACGGATGGCACACGATGCAGGTGAGGTGGACCTGGACCTGGAAAGGATGGCACTTGAAGCAGGTGAGGTGGACTTGGACTCTGAGTGGATG
CCACTTGAGGCAGGTGAGGTGGACACTGAGTTGGAGCAGGCTGTACTTGATGGTCTAGAGCCACCGTCACAGATTAAAGAGTTGAAAATTAATGGGTATT
CTGGAAGCCAACACGCATGCTGGATGCAGAATCAAGTGAGTGGCAGAAGAGGACCACAAGAGCTTGTTCACTTCCCATTTCTGAGGGTGGTGAAGCTATC
TGATTTCCCTAACTTGAAGCATCTAGATGGGCTTGTGGAGCTGCCTTGTTTGGAAGACCTTGAGCTGCGAGCGATGCCTTGTCTCGAGAGCATGAGTGGA
GGCCCATTTCCTTCCTTGTCGAGGTTAGAACTGGACACGCTGCCTAGTCTAGGAGAGGTGTGGCTGGTAGCCGAGACAACAATCCTACCTAGTGGTGAAG
GAGCAGGCCACAACGTCCATGACACTGGCACGCCTGGCTCTGGACGACAGGTCCGTGTTGGTGGTCGCTTGTCATATCTGTTTATACAAGACTGTCCCAG
GTTGAGGCTCAGGCCGCACATGCCTTCGTCGTTGGAGAGCCTGCACTTGTCCGAGAGCAGCGAGCAACTGCTGCAACTGCCTGCAGACCAATGCCTGGGG
TCTTCCTCTTCCTACTCCAATTTCAGCCACCTGAAGAAGCTTGGGCTATGGGGGATGACAGGACTAGGATCTGGACGCCGGTGGGAGCTTCTGCAACACA
TGACGGCGCTCGAGTCATTGGAGATCAACTCCTCTCTGGTGCTAAGAGAGCTGCCAGAGGGGTTGCGGAGCCTCACGTGCCTCCAGTCACTAATCGTGTT
CGCGTGCTCAGATCTTCTCGTGCTGCCCGAGTGGATAGGGGAGCTTGCGTCCCTGCAGCAGCTGTGCATCTGGACCTGCGATGTCTTAAGCAGCCTTCCC
CAGTCACTGGGGCAGCTCACATCCCTCCAGATGCTCTCCATAGAAGCATGCTACGAGCTTCACCGGCTGCCTGAACGCATAGGGGAGCTCTGCTCTCTAC
GCAAGCTCAGGATCAGGGATTGCCCGAGGCTGGCTTGCCTTCCGCAAATGTCCGGCCTCACCTCCCTTCAAGAACTCCTGATCAGCGACTGCCCAGGCCT
CACATCCTTACCGCAGGGGATGATGAGCGGCCTCGCTTCCCTTGAAAAGCTGATTGTCAGTGACTGCCCGGGGATCAAATTCTTGCCTCAAGACATAAAA
GGCCTCACCACTCTGATGGAATTGCGGATCCGTAGGTGCCCTGATCTGGAGAGGCGTTGTGAGACAGGAAAAGGGGAGGACTGGCACCTCATCTCCCACA
TCCCTAATTTGAGGATTTGGTGATCAGCAGCCAGCCTGCCATGGCATCATCATCTGCTGCATATACATCAATGTTCCAGCTTCAGGCACTCCTGGATGGA
GTGCAATGCAACCTTTTCATCAAGATAAAATTTGCTTCATGTCCAGCGAAGTATGTCACATTCCCCCTTTTTTTTCTTATGCAAATATTGCTACATGGTT
GTCGGGTACCATAATTAGGGGTACCCCCAGTACTACTAAGCATGGCTGGAGAACATCTTTAAAATAAACCATAAAGACTGGGAAGCACGGTTCAAAGTTA
AGGCCTCATCTACCGAGGGACGCGATCCCGTCTCACCCGAGCCCAGCCTCGGGCAAGAACAGTAGTCCCGAACCAGTGGCGGAGGACGCCAGAAAAATTA
GGTGTTGCTAATGCAACGAAGACTACCTTTGATCTTTCTATGCTTTGCTCACAAGTCTCACAAGTCACAATCAGACAACTAGAAGCATAGAAGCACGAAG
CAAGCAGACAACTAGAAGCACGAAGCATTAAGCAAGCAGCCAAGCAGACGTGCGGCCAAGCAGGAAGCAGCGGCAGGCGGCAGCCCTGCGGCCGTGCGGG
TCGGCGCCTCGGCGGGACCAAGCGGCAAACAGCCTGCAGCCGGCCGCCGGGTGGGACAAGACAACCGGTCAACCGGACAAGCAGATCAGCGGAGCGCCGG
AGCGGGTGGCTGGAGCGTGGAGCGACGGAGCGTGGCGAATCCGAGGCTCCGAGCGGCTGGAGGCCTGGAGGCTGGAGCGCCGGCAGGAGCGGCCGGCGGC
CGAGCGGGCAGTTGTGCGGGACGCCGGCTGTGCGGCAGTGCGAAACGTCGTGACGAACCCTAATCTCAAGTTGTGTGGGACGCCGGCTGTGCGGTTGTGC
GGCAGTGCGGAACGCCGAACCCTAATATCTATTCTATTAGTGGGCCAGCCTAAGGTATTGCCCAGGCAATACTGGGCCATACTGGGCCCTCCGCCCCTGT
CCCGAACGGATTCACGGCTCGCCCGAGGGTCCCCTCAGGCAGTGGGCGCACCCCCGGCTCGCTCGAGGCAAAGCTCGGGCGAACTTTGTCGTATAGCAAC
CTCGGCCAAATCGCCTTGCCACCGACCGTATCACGTGCGCATTTAATGCGGGGATCATCTGACACCTTATCCTGACACGCGCGCCTCAGTTGGCAAGGTC
GAAATGACCGCAGTCACTTCACCCTTTTACTGATCGTTCTGACAGGATGACGACACTATGCACCCCGTTCAGACCACTGTGCCAACCACCGGGGTAAGAC
TGACAACAGTAAGTCACCGCCTCTCCCGAGATCGGCCTCGGGCGCAGCAGGAAGTTCCGCCTCGCCCGACCCCAGCCTCGGCCTCGGAGGGAATCGTCGC
CACGCCCGACCCAGGCCTCGGCCTCAACCTCAGCCTCGGGAGGAGGTCTTCGCCTCGCCCGACCTAGGCCTCGGCCTCAGCCTCGGCCTGGGGAGGAGGT
CTTCGCCTCGCCCGACCTAGGTCTCGGCCTCAGCCTTGGCCTCGGGAGGAGATCTTCGCCTCGCCCGACCTAGGCCTCGGCTTTGGGAGAGATCACCGCC
TCGCCCGAGACGACCACGAGCCGACTACGCAAACCGGGAAAACAACACTATCCTTCCCCTAGCTAACCACCTCAGGCTACGAAGGAACAAGACCGGTGTC
ACATCAAATTACTCCAGTAGCAGGTAATGATGATTCCCGGCATGCGCCCATGACGTCGACCGCCCTCAGCTCTCTACGAAGGCAAAAGAACGTCAGCAGG
ACCTGGGGCCGCACCGCCAGCTACGCTTCTACAGGGCTCAAGCACTTCTCCGCCGGCCACGTTAGCACATAGCTACACCCCCACATGTACAGCTGGATCA
CCTCCTTGTATCTATAAAAGGAGATGCTCAGGGCCTTCCCACGACACGCTGAAAAGGCTAACTCAGACGGCTTACTTGAAGGCAAAAACCTTCTCTCCAC
AGCACGAGACCTCTCAAGAGACCTGGGATCCGTTCCCCCTCTCACGAGGCTTGTAACCCCTACTACAAGCACCCCGGTGCAAGATAATATAAGCCTCATC
TTTTCTCTTGTGTTTCATCTTGCATCAATCCATCCGAGCAGGGACACGCAACATAAAATTCACTAGTCGATTGAGGGTCCCCGCGGGTCCAAAACACCGA
CAGTTGGCGCGCCAGGTAGGGGCTCGCTGCGTGCTGACAATACTTTCCCGTTAAGTTCCAGATGGACAATCCTCAGCAGCCTCTTCAGCCCGGGACGGTG
CTCCGCTTTGGGAGTCTCGAGTTCATGTCCCTCGACGGCAGCTACGACATGATACTCCTCCCACCGCAGCACGACAGCAACGACGGTCGTCGGGTCGCCC
GGCGGAGACGAACTCGACGACAACCTCTCCCCAGGGCGGAAGAGGGACACTCGGGTCTACCCCGCCACCCTCCTCGCCAAAGGAGACGAAGACGGGGCAA
CCATGGCCCAGCAAGGGGCGGCACCTCGTCGGCTGTCGGACCAGAGCGAATTGACGACGCCGGCACCCCTGCGGGGGACATGTCGGGCGTTAGCCTCGCA
CCTGGGACAATGACGGGCGTCGCTTCCCGACAACGTGCCAACCCCAGGCGGACTGATGACGCCAGCACCCTTGCAAGGGACTTGTCGGGCATTAGTCTCG
CACCCGAGACAGCGACACGTTTCATCTCCGCTACAACTTCACCACCGTCCACCAACCAGGAGGTACCATCGGTTTTCCATCCTGTTCCTTTTAGATTCAG
CTTCGATCTGCCAGGCAGCCCCACTTCGGCTAGCACTTTCGCAAGGACATATCCTGACCTCCCGGGGTATCATATGTGGTCAACCTGGGACCTACTGACG
GTCGCCTCTACCTCCGAACCCGCGGGTCCCGAGGAAGAGGACGACCCCGACTTCAGTATGGATTTCTCCGAGCTCTGTGATCCCAGGGCCATGCGAGACT
TCATGTCCGCATGTGACCACTGCCTCTCCGGCGACTCTAACGATGGCCACGGCCTTGACGACGAAGGTTACGACCCAACTCGCGAGTGCTTCCACATTGA
TCAGGAGGAGCACGATGGAGACAACCACCTCGGCATGCCAAGAAACAACAACGCCCCTGCACCTGCGTCTCGCGTCGAGATCCCGCGGGAGCTAGCTGAG
GCCCAGGTCCCTGCGGGGGGTCAGGGCACGCAGCTTGAGCAGCTCCGCGAGATGCAGGCCAAGCTCGACGAAGAAACAGAGCGACTTATGCAGCTCCGAC
AGAACCTCGAGCAAGAGTGGGCAGGCCGAGCCCTCGCCGGAAGAGCGCATCATCGAGCCCGGGACGTCCAGCGCCGTATTATTGAAGATGCCGGGGCAGG
GCTGCCCCCGATCTTCAACGGGGCCAGCCAGAACCTAGCTGCAGCGGCGATGCTACTTCGAACAATGCCGGAGCCATCCACCACCGAGGGGCGGCGTATC
CGGGGCGAACTCAAGGGCCTCCTGGAAAACGCCGCAGTCCAACAAGCCGAGAGCTCTGCCTCCCGAAGGCGGGGATGCCCCTCGGAGCATCGCGACGAGC
CCTCCCGACACGTGCGAGAAGCCTCGGTCCATACCGAGCCCACAGGTGACAGGACCCCTGCGGTCCTGGATCGCCTCGACAACGAGCAACACCACCTCGA
TCGTCGAGCCCGCCTCGAGGAAAAGGTGCGCCGAGGCTATCACCCCAGGCGCGGAGGACGCTACGACAGTGAGGAGGATCGGAGCCCCTCACCCGAACCA
CCAGGCCCGCGGGTCTTCAGCCGAGCCATACGACGGGCGCCGTTCCCGGCCCGGTTCCGAGCTCCGACTACCATCGCCAAATATTCAGGGGAGACGAAGC
CGGAGTTATGGCTCGCAGATTACCGGCTGGCGTGCCAGTTGGGAGGAACGGACGACGACAACCTCATCATCCGCAACCTCCCCCTCTTCCTCTCCGACGC
TGCCCGGGCCTGGCTGGAGCATCTGCCTCCTGCGCAGATCTTCGACTGGGACGACCTAGTCAAGGCCTTCGCTGGAAATTTCCAAGGTACGTACGTGCGC
CCTGGGAACTCATGGAATCTCCGGAGCTGCCGCCAGCAGCCAGGGGAATCCCTACGAGAATACATCCGACGATTCTCAAAGCAGTGCACCGAGTTGCCTA
ACATCACCGACTCGGACGTCATCGGAGCATTCCTCGCCGGCACCACTTGCCGAGACCTGGTAAGCAAACTGGGACGCAAAACTCCCACCAAGGCAAGCGA
ATTGATGGACATAGCCACCAAGTTCGCCTCTGGTCAGGAGACGGTCGAAGCCATCTTCCGGAAAGACAAGCAGCCTCAGGGAAGGCAGAAGGAAGACGTC
CCCGAGGCGTCCGTCCAGCGCGGCATGAAGAAGAAGAGCAAAAAGAAGGCGCAAGCAAAACGCAACGCCGTTGAAGCAGATCTTGTCGCTGCTGTCGAAC
GCAGGAATCCTCGGAGACCTCCCGGAGGGGCCAACGTGTTCGATAAGATGCTCAAGGAGTCGTGCCCCTATCACAAGGGTCCCGTCAAGCACACCCTTGA
AGAGTGCGACATGCTCCGGCGTTACTTCAATAAGGCTGGGCCCTTGGCGGAAGATGGCAAGGACCAAGGCAACAACAATAAGGAGGGCGACAAGGAGGAA
GAGTTCCCGGAGGTCCACAACTGCTTCATGATCTACGGTGGGCAAGTGGCGAATGCCTCGGCTCGACGCCGCAAGCAGGAGCGCCGGGAGGTCTGCTCAG
TGAAGGTAGCAACTGAAAGGGAATTAGGCTTACACCTAGTTCCTATATAATTTTGGTGGTTGAATTGCCCAACACAAATGTTTGAACTAACTAGTTTGCT
CTAGTGTATAAGTTATACAGGTGCCAAAGGTTCACACTTAGCCAATAAAAAGACCAAGTATTGGGTTCAACAAAAGAGCAAAGGGGCAACCGAAGGCACC
TCTGGTCTGGCGCACCGGACTGTCCGGTGTGCCACCGGACAGTGTCCGGTGCACCAGAGGACTCCAACTCAAACTCGTCGCCTTCGGGAATTTCATAGAG
CCGGCGCGCTATAATTCAC

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GRMZM2G070831_T01 protein coding CNT0020781 144 213 UTR5 Trans
GRMZM2G123820_T01 Uncharacterized protein protein coding CNT0020781 590 240 CDS_UTR Trans
GRMZM2G341366_T02 protein coding CNT0020781 274 305 UTR3 Trans
GRMZM2G374030_T01 protein coding CNT0020781 402 285 CDS Trans
GRMZM2G387087_T01 Uncharacterized protein protein coding CNT0020781 981 335 CDS Trans
GRMZM2G429727_T01 protein coding CNT0020781 267 438 CDS Trans