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Detailed information on CNT0033040


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potentially orthologous lncRNAs:
CNT0042615 in A. thaliana

Most similar lncRNAs:
CNT0003560, E-value = 9e-14 (V. vinifera)
CNT0042615, E-value = 3e-32 (A. thaliana)
CNT0020781, E-value = 4e-25 (Z. mays)
CNT0000589, E-value = 3e-29 (G. max)
CNT0021918, E-value = 3e-32 (A. trichopoda)
CNT0026995, E-value = 3e-32 (O. sativa)
CNT0008755, E-value = 2e-11 (S. tuberosum)
CNT0040165, E-value = 6e-18 (S. moellendorffii)

Expression of CNT0033040

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0000003.0221.5410.2960000chloronema (SRR435295)chloronema (SRR435296)chloronema (SRR435297)chloronema (SRR435298)two-week-old protonema, whole organism (SRR787291)two-week-old protonema, whole organism (SRR787292)two-week-old protonema, whole organism (SRR787293)two-week-old protonema, whole organism (SRR787294)two-week-old protonema, whole organism (SRR787295)two-week-old protonema, whole organism (SRR790254)two-week-old protonema, whole organism (SRR790259)two-week-old protonema, whole organism (SRR790261)two-week-old protonema, whole organism (SRR790624)01230.250.50.751.251.51.752.252.52.753.25

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MVLLPIHSELLFGPLSQASPVKQQTIASKLLKKQLQEKPLMIE*

>peptide 2 (49 aa)
MQAKRERERERERERERERERERERESKETLIITKQCNKIEFKYSTAMA*

Sequence

>CNT0033040
AGTGAAAAGGGTAATTTAAATAAAAGTTGAGAAAGACTGGTACAAAGCTCATTTTTCAAAGAGCAATACGTTTCTTTCCAGAATTCATGTATGGTCTTAT
TACCCATTCATTCTGAGCTTCTGTTTGGTCCATTGTCCCAAGCTTCACCTGTTAAACAACAAACAATTGCATCAAAATTGTTAAAAAAACAGCTGCAGGA
AAAGCCGTTAATGATTGAATAGGAAGACCTCCTATTCAATCACATAACAGAAGCAGAAACATAGTCCTCTGCGGTGAAATTTAACTCTTCACAAATTTAT
GCAGGCGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAAAGAAACATTGATAATAACA
AAACAATGCAACAAAATAGAATTCAAGTATAGTACTGCCATGGCTTGACATGCATTGATTATAGGCAGCTTTACATCAGAG

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
PP1S340_22V6.1 Predicted protein protein coding CNT0033040 1320 481 CDS_UTR Cis