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Detailed information on CNT0040165


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potentially orthologous lncRNAs:
CNT0042615 in A. thaliana

Most similar lncRNAs:
CNT0003336, E-value = 1e-09 (V. vinifera)
CNT0042615, E-value = 3e-20 (A. thaliana)
CNT0033040, E-value = 6e-18 (P. patens)
CNT0020781, E-value = 2e-17 (Z. mays)
CNT0000589, E-value = 4e-19 (G. max)
CNT0023279, E-value = 6e-18 (A. trichopoda)
CNT0032070, E-value = 6e-18 (O. sativa)
CNT0008755, E-value = 9e-08 (S. tuberosum)

Expression of CNT0040165

ERR364347: 3.491 RPKM

Peptides detected in this lncRNA

>peptide 1 (32 aa)
CLSSSPVEVANFCVVAAWIAAWITLSSSSPCT*

Sequence

>CNT0040165
CTTGTCTGTCGTCATCTCCGGTTGAGGTGGCCAACTTTTGCGTAGTCGCTGCTTGGATCGCTGCTTGGATCACATTGTCCTCGTCCTCCCCCTGCACATG
AATACAGAAAGGCTTTAGTCGTAGAAAAACAGCTTTCAGAAAACTTAAGAAAATAGAGAGGGAGAGAGAGGGAGAGAGAGAGAGAGAGGGAGAGAGAGAG
AGAGAGAGAGAGTTAAGAGTGATGGAGCGGTGCTGCCGTGTTAGCCCGCCGCCTGCCTGATTGCTTCTCTTCTGCTGTAGCCTTAAAAGAAAACATCGAG
GACCGACAGGCACTGAGTGGTGTTTTCCGCATTCCCCCTCACATACTTTGGCAGCATATACTTCAGCAACGAGACCACATTTTGATCAGCGGATCTATCG
ACGGAGTAGCCATATGGTAGCTGTTTTGTCTCTTCAGGCCCGCTGTTGATTGATTGCCAACTGCGTGCTTGTAATGAAGCGGGACTTGTCCTCCAAGCTC
GCAGC