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Detailed information on CNT0021321


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0033555, E-value = 6e-08 (P. patens)
CNT0023169, E-value = 6e-08 (A. trichopoda)
CNT0011364, E-value = 1e-06 (S. tuberosum)
CNT0038783, E-value = 6e-08 (S. moellendorffii)
CNT0037149, E-value = 1e-09 (C. reinhardtii)

Expression of CNT0021321

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MHLVRSTTTTPATFIAAADPASFIATTPATFIAAADPASFIATTPASFIAWKRDSKFKPI*

>peptide 2 (42 aa)
MRSVTTSGKYSILKHMYVMQGNNHTSTVTPIASSSHTTSSTSV

>peptide 3 (51 aa)
MLLLLLLLLLLLLSLLLVVLLLLSSSSSSSSSSIILAVKGCNFWMQQANNT*

>peptide 4 (47 aa)
MIMVVLGRAGNELSQAQLGAAQWVTELDTATARAQERSWLDWQATSW*

>peptide 5 (58 aa)
GSMLSINDHGKKWKTTSAAGKLKDDLHDKTCICIMLTTKPRAQGKKQQTSHVTELLPT*

>peptide 6 (40 aa)
MYGQSNLALSQGTKLQLPKGTPIHQNERIDYHQQINKLIK*

Sequence

>CNT0021321
GGGCAGCATGCTCAGCATCAACGATCATGGGAAAAAGTGGAAAACAACCTCTGCAGCAGGAAAATTGAAAGATGACTTACATGATAAAACTTGCATATGC
ATTATGCTCACAACCAAACCTCGCGCCCAGGGAAAAAAACAACAGACCTCACACGTAACTGAACTGCTTCCAACATAAAATGCTCGTATTTTCCCTGATA
TATTGATAAGGCATGCATTGAAGGAAACGCCAGAAGTCTGCATGCACTTAGTTCGCTCGACCACCACCACCCCTGCCACCTTCATAGCCGCCGCCGACCC
TGCCTCCTTCATAGCCACCACCCCTGCCACCTTCATAGCCGCCGCCGACCCTGCCTCCTTCATAGCCACCACCCCTGCCTCCTTCATAGCCTGGAAACGA
GATTCAAAATTCAAACCAATTTAATGATTGAATGATTATGGTTGTGCTCGGTAGGGCTGGAAACGAGTTGAGTCAAGCTCAGCTCGGTGCGGCTCAGTGG
GTGACCGAGCTCGACACGGCCACTGCACGAGCTCAAGAACGAAGCTGGCTCGACTGGCAAGCCACATCCTGGTAGATATTACTGCATTATATATTGAAAT
AATAGTATGTAAATATGGAATATAGGAATCATCATTCAATATTATGAGTAATCTAAAATTTGAATTGTTATAATATTCACCATCAAAGGCTAAGAAATGG
GTCAATTATCCATTATTATTTTGCAGATTGATTAATTTAGCACAGTTGGCGTGGCTCGCGAGCCGCTCCACGCTCGAGCCAGCTCGTGAGCCTCGAGCGT
GGAGCCTCGAGCTTATTTTCCAGCCCTAGTGCTCGGTGAATGTAATATTTATGCAGCGCACACAAGCTGTTTTCAATTATTGTTATTGCTATTGATATTG
TAAATGTTACTCTTGTTACTATTGTTATTACTGCTACTATTATCATTACTACTAGTAGTATTATTACTACTCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCATTATTTTGGCAGTAAAAGGGTGTAACTTTTGGATGCAACAAGCCAACAACACTTAACAGTCCTCAAACGATTTAAAATTATTTTAATATCACTACAT
ATCACATATGAATTACAATAGAAATGTATGGGCAATCAAATTTAGCACTTAGCCAAGGTACAAAACTACAGTTACCAAAAGGAACACCAATTCATCAGAA
CGAGAGAATCGACTATCATCAACAAATAAACAAATTAATAAAATGAGAAGGTCAATTCAATGAGAAGCGTGACTACAAGTGGAAAGTACTCAATTTTGAA
GCACATGTATGTTATGCAGGGCAATAATCATACCTCCACGGTAACCCCAATTGCCTCTTCCTCGCATACCACCTCCTCTACCTCGGTT

lncRNA-RNA interactions

Number of interactions: 10

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
AC212898.2_FGT006 protein coding CNT0021321 264 160 CDS Trans
GRMZM2G065669_T01 protein coding CNT0021321 318 159 CDS Trans
GRMZM2G065669_T01 protein coding CNT0021321 271 188 CDS Trans
GRMZM2G125441_T02 Meiosis 5; Uncharacterized protein protein coding CNT0021321 107 106 CDS Trans
GRMZM2G125441_T03 Meiosis 5; Uncharacterized protein protein coding CNT0021321 107 106 CDS Trans
GRMZM2G125441_T04 Meiosis 5; Uncharacterized protein protein coding CNT0021321 107 106 CDS Trans
GRMZM2G125441_T05 Meiosis 5; Uncharacterized protein protein coding CNT0021321 107 106 CDS Trans
GRMZM2G125441_T06 Meiosis 5; Uncharacterized protein protein coding CNT0021321 107 106 CDS Trans
GRMZM2G164088_T01 Uncharacterized protein protein coding CNT0021321 834 305 CDS Cis
GRMZM2G164088_T01 Uncharacterized protein protein coding CNT0021321 1156 382 CDS Cis