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Detailed information on CNT0023169


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0033555, E-value = 3e-07 (P. patens)
CNT0021321, E-value = 8e-08 (Z. mays)
CNT0032208, E-value = 3e-07 (O. sativa)
CNT0011364, E-value = 1e-06 (S. tuberosum)
CNT0038783, E-value = 3e-07 (S. moellendorffii)
CNT0035657, E-value = 1e-09 (C. reinhardtii)

Expression of CNT0023169

ERR364329: 13.193 RPKM

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MKVKRVKSINSPHPENRGRCALRSIPLSCIFVHNSGCI*

>peptide 2 (486 aa)
MQKTQSKLSSTTGKVVEFAFDRASSAGPKSNESDIEDMSFRSQNGDLRETWYSQSVESYRERRSKWIAWRISQQRIPFSERETFKRTPEGMSLYLKLLEK
HNKRRKIFDDQGMGFANPVKENGSHGFHTSSNLEMNDLMGEESDFFPELMFPSNCVPDSAVPSTNKPEENQNIEFCGILDNLPQGICRNPAMIERFGMRA
EYFNMGIGRSKYRGKNRRSMCEEEASHLLQQALSRILVSIGFEGASSNSLEVLSQFLSCHICKLSQILRLLADSYRKQCTPVELLKMFIRTLGYSNPGAL
VEQLKDGTRVIPQPVQQPVRTIQPQHQAFLQGQQTQRHPQMQVLHTQNQAAQPHWDRLRRKQPLTPRGSNVGLERERPTVEVKVENSTDLPIDYAYGANQ
LIKQNQFQWKQQQLQLKLQPQQQQQQQQQQFKHLASLQIPHAQPQGMFNVRAPPVKDGFQDLMGGDAIMKHESEESKEHKLTSPRK*

>peptide 3 (66 aa)
CRKPNLNYHPLLARWLNLHLIELQVQGQKATSLILKICPSDPKMGICVRHGIANLLKVIEKEDQNG*

Sequence

>CNT0023169
ATGCAGAAAACCCAATCTAAATTATCATCCACTACTGGCAAGGTGGTTGAATTTGCATTTGATAGAGCTTCAAGTGCAGGGCCAAAAAGCAACGAGTCTG
ATATTGAAGATATGTCCTTCAGATCCCAAAATGGGGATTTGCGTGAGACATGGTATAGCCAATCTGTTGAAAGTTATAGAGAAAGAAGATCAAAATGGAT
AGCATGGCGTATTTCCCAACAAAGAATTCCATTTAGTGAGCGAGAAACATTTAAAAGGACACCAGAGGGAATGTCTTTGTACCTCAAACTTCTCGAGAAA
CACAATAAAAGGCGAAAAATATTTGATGATCAGGGAATGGGTTTTGCCAATCCAGTCAAGGAAAATGGGTCTCATGGGTTCCACACAAGTTCAAACTTGG
AAATGAATGACTTGATGGGAGAGGAATCAGATTTCTTCCCAGAACTCATGTTTCCATCTAACTGTGTGCCTGATAGTGCAGTCCCCTCCACTAACAAGCC
TGAAGAAAATCAGAATATAGAATTTTGTGGGATTCTTGATAATTTGCCCCAGGGTATATGCAGGAATCCAGCAATGATTGAAAGATTTGGCATGAGGGCT
GAGTACTTTAATATGGGGATTGGGAGAAGCAAATATAGGGGAAAGAACAGGAGATCCATGTGTGAGGAGGAAGCATCTCATCTGCTTCAACAAGCTCTAT
CTCGTATATTGGTCAGCATTGGTTTCGAAGGGGCATCGAGTAACTCATTGGAGGTTCTTTCACAGTTTCTTAGCTGCCACATTTGTAAATTAAGCCAGAT
CTTAAGACTGCTTGCAGATAGTTACAGGAAACAATGCACACCTGTGGAACTCCTTAAAATGTTCATACGAACATTGGGATACAGTAATCCTGGGGCTTTA
GTAGAGCAATTGAAGGATGGCACAAGGGTAATCCCTCAGCCCGTACAGCAACCGGTGCGAACAATCCAGCCCCAACATCAAGCATTCTTACAAGGACAGC
AGACCCAGAGGCATCCGCAGATGCAAGTGCTTCACACACAGAATCAGGCAGCACAGCCACATTGGGATAGGCTGAGGCGGAAGCAGCCATTAACCCCTCG
TGGCTCTAATGTCGGTCTAGAGAGAGAGAGGCCCACAGTTGAAGTTAAGGTGGAAAATTCAACCGATTTGCCAATTGACTATGCATATGGTGCCAATCAA
TTGATCAAGCAAAACCAGTTTCAGTGGAAGCAGCAGCAACTACAACTAAAACTACAGCCACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTCAAACATC
TTGCATCCCTTCAGATCCCTCATGCTCAACCACAAGGTATGTTCAATGTGAGGGCACCGCCTGTGAAGGATGGTTTTCAGGATTTAATGGGTGGTGATGC
AATTATGAAGCATGAAAGTGAAGAGAGTAAAGAGCATAAACTCACCTCACCCCGAAAATAGAGGAAGATGCGCCCTAAGGTCTATTCCTTTAAGTTGCAT
TTTTGTGCATAACAGTGGTTGCATTTGATTGTTTTCTTTTTACATCTTTTGGGCCTTGGGCCCATTCTTTCTGCTTGAGCTTTCGTGTTTCAAATCCATA
TGAGAAACTGTAGCCAATAAATTGTAACATGAAAATTGTAATTGATCTCAAAGTTGTACACGCATTCAACCAAAT