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Detailed information on CNT0038783


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q93VH6|GIF3_ARATH, E-value = 5e-27

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0033555, E-value = 2e-08 (P. patens)
CNT0021321, E-value = 2e-08 (Z. mays)
CNT0023169, E-value = 7e-08 (A. trichopoda)
CNT0032208, E-value = 2e-08 (O. sativa)
CNT0011364, E-value = 7e-08 (S. tuberosum)
CNT0035657, E-value = 3e-10 (C. reinhardtii)

Expression of CNT0038783

ERR364347: 44.276 RPKM

Peptides detected in this lncRNA

>peptide 1 (32 aa)
ENGFIILKNWSWRICCERARISHPPCFLASRS*

>peptide 2 (101 aa)
MAAYPGTTAITTELIQKYLDENKQLILAILDNQNLGKLNECAQYQLKLQQNLMYLAAIADAQPQPPLTAAQVPPGSMMQPGQHYMQQQQQQQQQQHMMQQ
SM

Sequence

>CNT0038783
GAGAATGGCTTCATTATCCTGAAAAACTGGTCATGGAGGATTTGCTGTGAGAGAGCCCGCATTTCTCATCCCCCTTGTTTCTTGGCTTCCAGGAGCTAGG
GTTTTCTCGCGCGCGCTAGGCAATGGCGGCCTATCCCGGGACAACCGCGATCACCACAGAGCTCATACAGAAGTACTTGGACGAGAACAAGCAGCTCATA
CTTGCAATCCTTGACAACCAGAACCTCGGCAAGCTTAATGAATGCGCGCAGTACCAGCTGAAACTCCAGCAAAATCTCATGTACCTCGCTGCCATAGCTG
ACGCTCAGCCACAACCACCTCTTACAGCTGCTCAGGTTCCTCCCGGGAGTATGATGCAACCGGGGCAGCACTACATGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAACACATGATGCAGCAGTCGATG