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Detailed information on CNT0021574


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005926, E-value = 4e-19 (V. vinifera)
CNT0042553, E-value = 1e-18 (A. thaliana)
CNT0035158, E-value = 8e-11 (P. patens)
CNT0000126, E-value = 4e-22 (G. max)
CNT0022384, E-value = 2e-17 (A. trichopoda)
CNT0030923, E-value = 1e-31 (O. sativa)
CNT0008938, E-value = 8e-11 (S. tuberosum)

Expression of CNT0021574

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MIYTDTNYTTWCRYLCNSLHCVKNLACCSLVDAPSGWSVITLSFEHKISQL*

>peptide 2 (45 aa)
MFYFLHKFRIAATDMQLKLVMTILCYILILNMLHCVDNYAIRYNA*

>peptide 3 (34 aa)
MAKCMHESNTFPCMRVNLGKICVAVSILNVLFPP*

>peptide 4 (31 aa)
MSIFKYIYIYIYIYIYIYIYIYRAGNNGHGF*

>peptide 5 (35 aa)
MADPKKHGSRMHAVIQILKLWQNACMSQTRSLACA*

>peptide 6 (68 aa)
ACCSIEDLVKVNKNDLFSTSSELADELMMLFKGFPEECNALKSLKECAMKSPSSSKWSQNGKPTPYRW*

>peptide 7 (29 aa)
MQFVTLRKKSGMLFTGGRTFGLERNNLKF*

>peptide 8 (50 aa)
MQCLEIPQRMCHEVTIIFEMVTEWETNALPLVNQVSGQTLLTRIVLHSSA*

>peptide 9 (41 aa)
MHESNTIQCMRINLGKICAAGSVFKSFISSINLGSLQQPCS*

>peptide 10 (36 aa)
MNYTHRNKKSYLMFYFLNKYKIPSTAMQLKHIKSSL*

Sequence

>CNT0021574
GCTTGCTGCAGTATTGAGGATCTTGTAAAAGTAAACAAAAATGATCTTTTTTCAACATCTTCAGAGCTTGCTGATGAACTTATGATGCTCTTTAAGGGGT
TTCCAGAAGAATGCAATGCCTTGAAATCCCTCAAAGAATGTGCCATGAAGTCACCATCATCTTCGAAATGGTCACAGAATGGGAAACCAACGCCCTACCG
TTGGTGAACCAAGTAAGTGGCCAAACATTGCTTACTAGAATTGTGTTACACTCGTCAGCTTAGGTCTTACCTATTTTCGTGTCCAAATTTATAGATCGTT
GGTTGAGATGTGTGCGAACATATACTCCCTTAATATTAGTCGTTTTAGCCCTTAAAATTTATGTCTATATTCAAATATATATATATATATATATATATAT
ATATATATATATATATATATATATATAGGGCAGGTAATAACGGGCATGGTTTTTAAAGCGGTAAGGCGGTCCAAGGCGTTGGACCACCACCTAGACGCCT
AGGCGAGGTAGGCGGGCAAGACGCCTAGGCGTCAGACCACCGCCCGGACGCCTAGGCGTCGCCTAGGCGACGCCTTAAAAACAGTGATAACGGGAGCTCT
GGGCTTCCAATAGTTAAAGGAAGCCCAGGCCGACCACCCCTGCAAACTGGTTCAACCAGCGCGCCCAAACAGGCTGTCGGGTGCGCCACCTGTCCCACGT
CTGTTAGCGCAAAAAAAAGGAATGCATGCATGAGTCAAACACGATCCAATGCATGCGCATAAATTTAGGAAAGATATGTGCGGCAGGATCTGTTTTTAAA
TCTTTTATTTCCTCCATAAATTTAGGATCGCTGCAACAGCCATGCAGCTAGACGCGTAAGGACCATTTTATGATATATACTGAGACTAAATATGCTACAC
TGTGTTAATAATTATGCAATTCGATATACTGCGTAAAAATCTGTTACCAGCTGTATGCACACGAATTTATGATAAAAATAATGTGCAATGAAAGGAAATG
AATTACACGCATAGAAACAAAAAATCGTATTTAATGTTTTATTTTCTTAATAAATATAAGATCCCTTCAACAGCCATGCAGCTAAAACACATTAAATCTA
GTTTATGATATATACTGATACAAATTATACTACATGGTGTAGGTATTTATGCAATTCGTTACACTGCGTAAAAAATCTGGCATGTTGTTCACTGGTGGAC
GCACCTTCGGGTTGGAGCGTAATAACCTTAAGTTTTGAGCATAAAATCTCTCAATTATAAGCGTATATACCGAGCCAATGTGAGAGGTTGATAGCTCTAG
TAGGTTGTTATTACGATCCTATTTTTATGGCAGATCCAAAAAAACATGGCAGCCGCATGCATGCGGTTATACAGATCCTAAAATTATGGCAAAATGCATG
CATGAGTCAAACACGTTCCCTTGCATGCGCGTAAATTTAGGAAAGATATGTGTGGCGGTTTCTATTTTAAATGTTTTATTTCCTCCATAAATTTAGGATC
GCTGCAACAGACATGCAACTAAAACTCGTAATGACCATTTTATGCTATATACTGATACTAAATATGCTACACTGTGTAGATAATTATGCAATTCGGTATA
ATGCGTAAAAATCTGCTACAGGCTGCATGCACACGAATTTATGATGGAAAGAATATGCAATGAAAGGAAATGAATTGCATGCATAGAAACAAAAAATCAC
ATTTAATGTTTTATTTCCTTCATAAATATAGGGTCCCTCCAACAGCCATG

lncRNA-RNA interactions

Number of interactions: 8

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GRMZM2G136268_T01 protein coding CNT0021574 107 57 UTR5 Trans
GRMZM2G136268_T02 protein coding CNT0021574 107 57 UTR5 Trans
GRMZM2G359365_T01 Uncharacterized protein protein coding CNT0021574 1053 651 CDS_UTR Trans
GRMZM2G359365_T01 Uncharacterized protein protein coding CNT0021574 1922 796 CDS Trans
GRMZM2G363187_T01 Uncharacterized protein protein coding CNT0021574 614 372 CDS Trans
GRMZM2G456059_T01 protein coding CNT0021574 599 373 CDS Trans
GRMZM2G557683_T01 Uncharacterized protein protein coding CNT0021574 735 486 CDS Trans
GRMZM2G557683_T01 Uncharacterized protein protein coding CNT0021574 1846 796 CDS Trans