« Back to Amborella trichopoda search


Detailed information on CNT0023377


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|B4SA76|TRUA_PELPB, E-value = 1e-16

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0006299, E-value = 9e-14 (V. vinifera)
CNT0035276, E-value = 9e-08 (P. patens)
CNT0002951, E-value = 9e-08 (G. max)
CNT0032380, E-value = 2e-14 (O. sativa)
CNT0036309, E-value = 4e-19 (C. reinhardtii)

Expression of CNT0023377

ERR364329: 8.129 RPKM

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MMCCLGSWMQHVGEPLHLQLLRMAFALWMLVMKISSQETHSFDEQQPVYFCVCVFVCVCVCVCV*

>peptide 2 (35 aa)
MSSNQFTFVCVCLCVCVCVCVCERERERLHLECLD*

>peptide 3 (36 aa)
MGTMITVNLTGGLPGSPTSLCMIDHGNILWISILVW*

>peptide 4 (30 aa)
MRVHPQSASFTMLEQLKPDYLAQMRLMAMD*

>peptide 5 (438 aa)
MLRIRRRGVFTVINGIMRASSSMETDSSNKIYVHYGHDDYCKFNRWTSRESYQFMYDRPWQHIVDFYSCLVDRRLSLSSMFVVEGNMFEDVIEETHACKE
IESAETYKDSRGGRWARRTFKIVVSYHGSSFDGWQKQPGLRTVQGSVESVLGKFVDDKKAQQLRDKSLPVEGCATVAGRTDKGVSALQQVCSFYTWRTDV
KTQEIEHAINTVAPGQLRAVYVSEVSRAFHPNFSAKWRHYLYIFPLKVEEESLGLENIGGGFIQCNNHDEERKEWVENGLENGCSIMVDEDYLERSKPMR
FSVSKVDRILRQLEGRLLSYKMFARDTKSSRNEGPPTECFLYHARAAETRLPCPDEVDGNGLGVMCVELVANRFLRKMVRVLVATSIREAAAGAGDDVLL
RLMDATCRRATAPPAPPDGLCLVDVGYEDFKPGNTFIR*

>peptide 6 (66 aa)
MSRLNWSGIFLVRSSESPIFVRSLDFRRRGYIYFYKFGFLLNYFYLVQFFRGEAFVQVFPYFTNNA*

>peptide 7 (29 aa)
WQSSRFAGFWGWSLKLKINGELLTIFWRF*

>peptide 8 (39 aa)
MHDPLPVMGAMRGIFFILFKLREQYLSGRSLYLCFLDPL*

Sequence

>CNT0023377
CTGGCAAAGTTCACGTTTCGCCGGATTCTGGGGTTGGAGCCTGAAGCTAAAAATTAATGGAGAGTTACTGACTATTTTCTGGCGTTTTTAGTAGTGCTTT
ACGGGCTGCCATTAATATTTATTGAGTGTGATATATGCTGAGAATTAGAAGAAGAGGAGTATTTACAGTAATTAATGGAATAATGAGGGCCTCCTCTTCT
ATGGAAACTGATTCCAGTAACAAAATTTACGTTCATTATGGGCACGATGATTACTGTAAATTTAACAGGTGGACTTCCAGGGAGTCCTACCAGTTTATGT
ATGATAGACCATGGCAACATATTGTGGATTTCTATTCTTGTTTGGTAGACCGGCGTTTGTCATTGTCTAGCATGTTCGTTGTTGAGGGAAATATGTTTGA
GGATGTGATTGAAGAAACTCATGCATGCAAGGAAATTGAATCAGCTGAGACTTACAAGGATTCTAGGGGTGGGAGATGGGCAAGAAGGACATTTAAAATA
GTTGTTTCATACCATGGGAGTTCCTTTGATGGGTGGCAAAAGCAACCAGGCCTGAGAACTGTTCAAGGGTCAGTTGAAAGCGTTCTTGGGAAATTTGTGG
ATGACAAAAAAGCTCAGCAGCTGAGAGACAAATCTTTACCTGTTGAAGGTTGTGCAACAGTTGCTGGGCGAACTGACAAAGGGGTATCAGCACTTCAACA
AGTCTGTTCATTCTATACTTGGAGGACAGATGTCAAAACTCAAGAAATCGAGCACGCAATCAACACAGTTGCCCCAGGACAGCTGAGAGCTGTCTACGTT
TCTGAGGTCTCACGTGCATTCCATCCTAATTTCTCAGCTAAATGGAGGCATTATTTATACATTTTCCCTCTCAAGGTTGAAGAGGAAAGCCTGGGCCTTG
AAAACATAGGTGGTGGTTTTATTCAGTGCAACAACCATGATGAAGAAAGGAAAGAATGGGTTGAAAATGGGCTAGAGAATGGGTGCTCAATAATGGTAGA
TGAGGACTATCTTGAGAGAAGTAAACCAATGAGATTCAGTGTTAGCAAGGTTGATAGAATTCTGCGACAGTTGGAAGGGAGGTTATTGTCCTATAAAATG
TTTGCAAGGGATACTAAATCTTCAAGGAATGAGGGTCCACCCACAGAGTGCTTCCTTTACCATGCTCGAGCAGCTGAAACCAGACTACCTTGCCCAGATG
AGGTTGATGGCAATGGATTAGGAGTCATGTGCGTGGAACTGGTAGCAAATAGGTTCTTGCGTAAGATGGTTCGAGTTCTTGTAGCAACATCAATAAGAGA
GGCAGCTGCTGGTGCGGGCGATGATGTGTTGCTTAGGCTCATGGATGCAACATGTAGGCGAGCCACTGCACCTCCAGCTCCTCCGGATGGCCTTTGCCTT
GTGGATGTTGGTTATGAAGATTTCAAGCCAGGAAACACATTCATTCGATGAGCAGCAACCAGTTTACTTTTGTGTGTGTGTGTTTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGAGAGAGAGAGAGAGAGATTGCATCTAGAATGTCTAGATTGAATTGGTCTGGGATTTTCTTGGTCCGTTCATCAGAGAGTCCAATAT
TTGTGAGAAGTTTAGATTTTAGACGGAGAGGGTATATCTATTTTTATAAGTTTGGCTTTTTATTAAATTATTTCTACCTAGTTCAATTTTTCAGGGGAGA
AGCCTTTGTTCAAGTATTTCCATACTTCACAAACAATGCATGATCCACTCCCTGTTATGGGAGCCATGCGAGGAATATTTTTTATCTTGTTTAAGTTGAG
AGAACAATACTTGTCGGGAAGAAGTTTGTATTTGTGTTTCTTGGACCCTTTGTAATGGGTTAATTTAGCATTCTAAGCAGGGCTTTAAACTCACCG