Detailed information on CNT0002951


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9LZJ6|ATL5_ARATH, E-value = 1e-15

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0033314, E-value = 3e-08 (P. patens)
CNT0023377, E-value = 1e-07 (A. trichopoda)
CNT0024577, E-value = 4e-10 (O. sativa)
CNT0037273, E-value = 4e-10 (C. reinhardtii)

Expression of CNT0002951

Peptides detected in this lncRNA

>peptide 1 (40 aa)
LYALVRSPTTIPWSHTKATVIPFHLFTISIFFLLFFSEYL*

>peptide 2 (72 aa)
MRAKVLVEFLAYRFEVLLSMVSLTQASTLLLLMLNRLNKWLITYFFSCTIIFSSKFFLYNAYCSYHRLLGWI*

>peptide 3 (33 aa)
MFNFYETYQYWNLFYLVMILLVIVLIRNLVYEE*

>peptide 4 (75 aa)
MLGSGTNLVTTVIGFGMSATFIVFVCTRIICGRLRGGVESRMMYEIESRIDMEQVSLAVPFSFLCPFFPFTVFCL*

>peptide 5 (88 aa)
MPKCGHTFHLSCIDIWLRKQSTCPVCRLPLKNSSETKHVRPVTFTMSQSLDESHTSDRNDDIERYVEPTPTAASNSLQPTSGEQEARQ*

>peptide 6 (37 aa)
SLCSCTFPHHHPLESHQSHCDSIPSLHNFYFFSSLFL*

>peptide 7 (55 aa)
MILRDMLNLHLLQPVTLYNQLQENKKQGNDLRELKGLFCSKREECRISASIEECF*

>peptide 8 (48 aa)
MAFIFTWWCKYVSFCSICGPRFWWNFLHTDLKFFCLWYRLLKQAHCSC*

>peptide 9 (35 aa)
MAEETIHLSSMPSAVEKLFRNETCETCDIYHEPIP*

>peptide 10 (29 aa)
MFLDPPNIIVDHKRILCLICNLVYVILHC*

Sequence

>CNT0002951
CTCTCTATGCTCTTGTACGTTCCCCCACCACCATCCCTTGGAGTCACACCAAAGCCACTGTGATTCCATTCCATCTCTTCACAATTTCTATTTTTTTTCT
TCTCTTTTTCTCTGAATACCTCTAAAGTTTCCATTTTTCTGACATGGGTATCTCTTATTTTCTCTGTTTCTCTTAGTTTCAATCTTCTCTTCTTGTCTCT
TTGGACTTGTCACGTGTGGGGTGCCATCATGTGTTTGTGTTGAAGAATCTGTGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCTATATGCTGT
GGTGCTGCTTCTGTTGCTACTTGTGCTTATAGCTTTTGGGGTTTGTGTGTTGTGGATTGGATTTTGGGTTGGAGATGTTGGGTTCAGGTACCAATTTGGT
GACCACGGTCATTGGGTTTGGGATGAGTGCCACTTTCATTGTGTTTGTGTGCACCAGAATCATTTGTGGGAGGCTAAGAGGGGGTGTTGAATCTCGGATG
ATGTACGAGATTGAATCAAGAATTGATATGGAACAGGTAAGTTTGGCTGTGCCTTTTTCCTTCCTTTGCCCCTTTTTCCCGTTTACTGTTTTTTGCTTGT
GAACGTGGCTAGATTTTGAGTGCTATGTTCAATTTTTATGAAACTTATCAATATTGGAATCTATTTTATTTGGTCATGATTCTTTTGGTTATTGTTCTGA
TCCGGAACTTAGTGTATGAGGAATGAGGATAGCTGCAATTTTTTGCTGTTTTTTGTAACTTTTGATTCTGATGCAAATGCTGCATTCTGTTTCCAAAAGT
AAACCTGCGACTTGGCTGTAAACTTTCAATAAGATGTAGAGAATTGGGTATTTGTATCAATGAATGTGTATACTGCCCCTTAATATTGATTGTCATTTGT
CTTGGTTAGATACTAAGATGTACAGAAATGTTCTAATTGTACTGTAGTGGAGACTTTTCCATTGTTAATAACAACAATGAAGCCTTATCCCACAAGATGA
GTTCAACTACATAGATCGCACAATGACATTTGGCTTGGTTAAAGACCAAATCTTCACAGATAGCAACATTATATTCGGGTGCTGATGCAGTGGCTCTAAC
TCATTTGACACAGTACTGTAGCCATATACAACACTTTACTTCTGGATAACAACCTAGCATTAGCAAAAATCTGTTGTGTGTGATCCATGTCCCGTATATC
GACAAGTTTTATGTTAACTGCCTAGAGCCTGATACAATCCTCCTCCTTTACTTGGGCTTGGGACTGGCTATGAAACTATAGGCGGTGTTACTTTTTCATT
GTTAATGTTTCATATAATTTCAAGCTCATGAATTTGAATGTTTCTTGACCCTCCAAATATAATAGTTGATCACAAGAGAATACTTTGTCTAATTTGTAAT
TTAGTTTATGTCATTCTGCACTGTTAAGGTTGGTTGCTTTAGATTTTAATTTTTCATTGTTTACTGATAGCCAGAACATCATGTTAATGACCCTGAATCC
GATCCTGTTCTTCTTGATGCAATCCCTACTTTGAAGTTCAACCAAGAGGCTTTCAGTTCCCTTGAACACACACAGTGTGTAATATGTTTGGCAGATTACA
GAGAAAGAGAAGTATTGCGCATCATGCCCAAATGTGGCCACACTTTTCATCTTTCTTGCATTGATATATGGCTGAGGAAACAATCCACCTGTCCAGTATG
CCGTCTGCCGTTGAAAAACTCTTCCGAAACGAAACATGTGAGACCTGTGACATTTACCATGAGCCAATCCCTTGACGAGTCTCACACATCAGACAGAAAC
GATGATATTGAGAGATATGTTGAACCTACACCTACTGCAGCCAGTAACTCTTTACAACCAACTTCAGGAGAACAAGAAGCAAGGCAATGATCTTAGAGAA
CTAAAGGGGTTGTTCTGCTCAAAAAGAGAAGAATGTAGAATTTCTGCTTCTATAGAGGAATGCTTCTAATTATAGATTGGATTCAAATTCTTTGTCTGTA
ATATGGCCTTCATATTCACTTGGTGGTGTAAATATGTTTCCTTTTGTAGCATATGCGGGCCAAGGTTTTGGTGGAATTTCTTGCATACCGATTTGAAGTT
CTTTTGTCTATGGTATCGCTTACTCAAGCAAGCACACTGCTCTTGTTAATGCTTAACAGATTAAACAAATGGTTGATTACATATTTTTTTTCTTGTACAA
TTATTTTTAGTAGCAAATTTTTTCTATATAATGCTTATTGTTCTTATCATAGGTTATTAGGATGGATCTAGAAAATTTGGATAGTGGG

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA13G07450.2 Uncharacterized protein protein coding CNT0002951 108 84 CDS Trans
GLYMA13G28480.2 Uncharacterized protein protein coding CNT0002951 89 66 CDS_UTR Trans
GLYMA16G01410.2 Uncharacterized protein protein coding CNT0002951 99 70 UTR3 Trans
GLYMA16G01410.3 Uncharacterized protein protein coding CNT0002951 99 70 UTR3 Trans