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Detailed information on CNT0006299


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0035276, E-value = 4e-06 (P. patens)
CNT0023377, E-value = 6e-14 (A. trichopoda)
CNT0030105, E-value = 9e-07 (O. sativa)
CNT0036309, E-value = 4e-09 (C. reinhardtii)

Expression of CNT0006299

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.310.1940.2941.416000000grain (SRR866531)grain (SRR866540)grain (SRR866544)seeds (SRR866574)seeds (SRR866575)skin (SRR866568)skin (SRR866569)skin (SRR866570)skin (SRR866571)skin (SRR866572)00.10.20.30.40.50.60.70.80.911.11.21.31.41.5

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MWQFHLLLVAQETLILNKNPKSHFYAYFLIWVFFVKSLKRYIYM*

>peptide 2 (37 aa)
MCVCVCERERERYACKGPPMLSTSKVINALTIFRNSH*

>peptide 3 (58 aa)
MDDAFHLCVCVCVCVRERERDMHVRVPPCSQPLKLLMLLQYLETLTNLSAICMVVVLA*

>peptide 4 (34 aa)
MIGLSFPHESTLLGSALLLLLMGAPLSVEAASMI*

>peptide 5 (48 aa)
LLCFSFWCEPYATLLLKPCKLVPPPYTTVYSSSPWMMPSICVYVCVCV*

>peptide 6 (37 aa)
MPFEYFKIPHCALGLSHAVLFLLIHEDINLPCCLIWN*

Sequence

>CNT0006299
CTTTGCTTTGTTTTTCTTTTTGGTGTGAACCTTATGCAACACTACTATTGAAACCATGCAAATTGGTCCCCCCACCATATACTACCGTTTACAGTAGTTC
TCCATGGATGATGCCTTCCATTTGTGTGTATGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGATATGCATGTAAGGGTCCCCCCATGCTCTCAACCTC
TAAAGTTATTAATGCTCTTACAATATTTAGAAACTCTCACTAACCTGTCTGCAATCTGCATGGTGGTGGTGTTGGCGTGACAATATTCAATTTGCATCAC
TTGGGACCACTTTACTTCAATAATTTTCAAAGCTTTTCAGTTCCTCTATTCTCCATCTTGTGTCAAATAAAATTTGATTACTCCCCTTTAATTTCCTCTC
TTCACACTTCTATTTATATCCTTCACATCCTCTCTTCTCTAGGTGAACTTTAGCTGCAGAAGCAGCAGAAGAAGCAGCTCTGTTGTATGATAGGTCTCTC
TTTTCCCCATGAGTCTACCCTACTAGGGAGTGCTCTTCTTCTTCTTCTAATGGGTGCACCACTATCAGTTGAAGCTGCCAGCATGATCTAAACTTGCTTC
CCTTTGTGAACAGAGATCAGATCATGTGGCAGTTTCACCTGTTGTTGGTAGCACAAGAAACCCTAATCCTGAATAAAAACCCTAAGTCCCACTTCTATGC
TTACTTTCTCATCTGGGTTTTCTTTGTAAAATCCCTAAAAAGGTATATATATATGTGATCTTCTTGTCTTGGATTTTTGCTCATCTGGGTTTCTGTGACA
TCCTTCTTTTGAAGTACGTTAATTCTGGTGTTCTGAATGTGGGGTTTTCTTGTTTTAAACTTGCGCGAAAAAAATGTTAGCTTGATGAGTTGGTTAGGGT
TTTGAGTGACAGGATCTTTTTGCGTCTCCATGCCATTTGAATATTTCAAGATCCCCCACTGTGCTTTGGGATTGAGTCATGCCGTACTATTTCTGTTAAT
TCATGAGGATATCAATCTCCCTTGCTGTCTGATTTGGAATTGACCCAGGCATATCCATCTACCTAAGTTTTTACGAAGTGGGGATCTGCCCAGCAATGGT
CGGAGAAGTCAGGAAAATATGTTGAGGTGAACCAGAAAAGTTCATGGGAGCTGGATCTAACTGTCGACTTAGTAAGTGTTGAGTGTTCACTATTCTATCA
TCTGTCATTGCATTATATGTTGTCTGTTTTGGGGTAGGAGAGAGCTCAGACCTATATGCCCCATTAAATTCTTTTTGACCTTCGTCTTCTTCCCTCAGGT
TGAATTCTT