« Back to Oryza sativa search


Detailed information on CNT0026952


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q5ZKI2|DPH2_CHICK, E-value = 2e-07

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005926, E-value = 3e-19 (V. vinifera)
CNT0042553, E-value = 1e-18 (A. thaliana)
CNT0035158, E-value = 7e-11 (P. patens)
CNT0021574, E-value = 2e-23 (Z. mays)
CNT0000041, E-value = 1e-21 (G. max)
CNT0022384, E-value = 2e-17 (A. trichopoda)
CNT0008938, E-value = 2e-11 (S. tuberosum)

Expression of CNT0026952

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MFDLSPFLVITIRKQTKQTLNTSTTSKFGNSKTSHLTPCIC*

>peptide 2 (47 aa)
MKSRENILELSSTSGKLASFAELGRPMTNVYDFFPAALIRSFICSMM*

>peptide 3 (56 aa)
MEHLAGFAKQCDLAGCFCQYLQPPWYRGTKLQICKYGILYSMLAGDVQHRSEHITV*

Sequence

>CNT0026952
CTTTGCTAAATTATCATAGCATGATTACAAACTTACAATCAGCATATGGAGCATCTAGCCGGCTTTGCAAAACAATGTGATCTTGCTGGCTGTTTCTGCC
AGTATTTACAGCCACCTTGGTACAGAGGAACCAAATTGCAGATTTGCAAATATGGAATACTGTACAGTATGTTGGCAGGAGATGTACAACATCGTTCTGA
ACATATAACAGTTTGATGAAACACAGTTCCCTAGTAGGAGCAGAGGCTGGGGAGTTTCCCTTCCATCATAAAAGAAAAAAAAAAAGGAACACATAGTTCA
TGGCTCACAACAAAACTGAGGCATCTGACAGTACTTTCTGAAGTACAAAATTGCCTCTCCATCAATCGCCCATCGAGGGCAAACAAGTCAAATATATATA
TATATATATATATATATATATATATATATATATATATATATATTTTCCCACTCAAGGTATGTCATTCATTCACTGTGTAATCTCCTTTTTCTCGTTGTTG
TAACCGGCAGCTCTCCCTGTTCTGCCTGTCAAGACCGAGTCTGGTGCTGGACCCTCGTATTCTCCGGTGAGACCACGGTAGGATCGTGCCTTGAGATAGT
CGATCGCAGACTTTGCTCCTCCTTGGTAAAGAACTGCATCATTATTCTGATTTTTTATACTTAGCGCCTTCTCTGTTACCTCAGCAAGTGCAAGCGATGT
CTCTGGCTGTTCCTCGTTATCTGCAATTATCTTCCACATAGCCACCTTTGATAAAGGAAAATCTTGCTTCTTCAGTTGTGCTTGAAATTTCTGGTTTATC
TGTAGTGATCAAATCCTTGAAATCTAGAAGATACTCTCCTGTCCATTCCCTTCCCCTGAAAAACTAATACAGCTTCGAAAGGCGTAATGACTGGAGCTAA
AAAATCTTTGCTATCCAATAGAGCAGTTTGGGCACAAGAAACATAAACAAAAACTTCACACTGCCATACCAAAAAAAAAAAAAGAATGGTGAGTCAGTTA
TCCTTAACATGAAAAGCAGAGAAAACATATTAGAACTCAGTAGCACCTCAGGGAAATTAGCAAGTTTTGCGGAATTAGGTCGGCCCATGACTAACGTATA
TGATTTCTTTCCAGCAGCCTTGATCAGATCTTTCATTTGCTCAATGATGTGAAGATAACCAGCTGCATATGAAAATGATGCCATGTACCACATAATATCA
TTTAGATGTAGTGTGTAATAAAGTTAAAAGACAATAATGTGCAAGCTAAAGCTATAGTGGCAGTGAGGTTCAGTGAAAGCATTTATAATATAAAAATCAA
AACAAATAGACAGTTCAGTTGAAAATAAAAGGAATAGGGGTATGTTTGATCTGTCACCATTTTTAGTCATTACAATAAGGAAACAAACCAAACAGACTCT
AAATACTTCTACCACATCAAAATTTGGTAATTCTAAAACATCACACCTAACACCTTGCATTTGTTAAGGTG

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
OS01T0201700-01 Os01g0201700 protein protein coding CNT0026952 105 53 UTR3 Trans
OS06T0674000-01 Os06g0674000 protein; Putative uncharacterized protein B1472F02.9 protein coding CNT0026952 103 52 UTR5 Trans
OS10T0505700-01 Nonspecific lipid-transfer protein 2, putative, expressed; Os10g0505700 protein; Protease inhibitor/seed storage/LTP family, putative; cDNA clone:001-112-C03, full insert sequence protein coding CNT0026952 96 50 UTR3 Trans
OS11T0265600-00 Diphthamide biosynthesis protein 2; Diphthamide biosynthesis protein 2 containing protein, expressed protein coding CNT0026952 1480 554 CDS Cis
OS12T0639800-00 Os12g0639800 protein protein coding CNT0026952 104 55 UTR3 Trans