« Back to Arabidopsis thaliana search


Detailed information on CNT0042639


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana):
NONATHT001792, E-value = 0.0

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005984, E-value = 3e-25 (V. vinifera)
CNT0018989, E-value = 5e-18 (Z. mays)
CNT0002613, E-value = 1e-30 (G. max)
CNT0022204, E-value = 2e-20 (A. trichopoda)
CNT0031477, E-value = 1e-21 (O. sativa)
CNT0011195, E-value = 1e-27 (S. tuberosum)
CNT0037993, E-value = 3e-13 (S. moellendorffii)

Expression of CNT0042639

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)43.19541.99535.18844.764100.0781.427152.5772.022.803112.06104.4631 287.916687.16418.865101.942123.37271.01495.237117.384101.27580.71880.684.94705.77514.45317.34154.1571.5560014.91310.082endosperm (SRR068956)endosperm (SRR068957)endosperm (SRR068958)endosperm (SRR068959)floral bud (SRR314815)floral bud (SRR314818)non specified (DRR008476)pollen (SRR847501)pollen (SRR847502)root (SRR314814)root (SRR314817)rosette leaf (ERR754068)rosette leaf (ERR754089)seed (ERR588038)seedling (SRR314813)seedling (SRR314816)seedling (SRR346552)seedling (SRR346553)seedling (SRR847503)seedling (SRR847504)seedling (SRR847505)seedling (SRR847506)seedling (SRR944363)seedling (SRR944364)seedling (SRR944365)seedling (SRR944366)seedling (SRR944367)seedling (SRR944368)seedling (SRR944369)seedling (SRR944370)seedling (SRR944371)seeds (ERR588039)siluge without seeds (ERR588040)010020030040050060070080090010001100120013001400

Peptides detected in this lncRNA

>peptide 1 (66 aa)
LAIYSGDSLVRKWRERRTKRRLHHESQVEEEAYEETKEEAPKDETAIQVVHSIGRVSKFLSYVIPF*

Sequence

>CNT0042639
CTAGCTATATATTCTGGAGACTCTCTCGTCCGTAAGTGGAGAGAACGGCGAACGAAGCGGCGATTGCACCATGAGAGCCAAGTGGAAGAAGAAGCGTATG
AGGAGACTAAAGAGGAAGCGCCGAAAGATGAGACAGCGATCCAAGTAGTCCATTCCATAGGACGTGTCTCAAAATTTCTATCTTATGTAATACCTTTCTA
GTTTCTTGATTTTTAAGCAGCTTCTTGAATCAGTTTTGAACCTTTTGTGTTTTTTGCATTTTAGTCTTGAACAATCATCTCAGTCTATATTTTGAATTTG
GTTCACTCCTATATCCACTAGATGCAGTTCTGGCAAAACAGAGATTTGGTTTTTGAATCTTTTAACAGTTAATC