Detailed information on CNT0005984


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0042639, E-value = 4e-25 (A. thaliana)
CNT0018989, E-value = 1e-21 (Z. mays)
CNT0002995, E-value = 7e-39 (G. max)
CNT0022204, E-value = 2e-27 (A. trichopoda)
CNT0031477, E-value = 1e-22 (O. sativa)
CNT0011195, E-value = 7e-33 (S. tuberosum)
CNT0037993, E-value = 8e-14 (S. moellendorffii)

Expression of CNT0005984

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)132.611174.984115.97397.726122.228193.731186.195184.27591.70875.066grain (SRR866531)grain (SRR866540)grain (SRR866544)seeds (SRR866574)seeds (SRR866575)skin (SRR866568)skin (SRR866569)skin (SRR866570)skin (SRR866571)skin (SRR866572)0102030405060708090100110120130140150160170180190200210

Peptides detected in this lncRNA

>peptide 1 (31 aa)
NIQISPSPLGFTYKYFDSPQDPKSLPSLPAA*

Sequence

>CNT0005984
CCAACATCCAAATAAGCCCATCACCCCTAGGGTTCACCTATAAATACTTCGACAGCCCTCAAGACCCAAAATCTCTGCCCTCTTTACCAGCAGCCTAGCA
GAAAAATTAGGGTTTTACAGAGAAGGAAGGCTATCATCACCCGATCACCATGAGAGCTAAGTGGAAGAAGAAGCGTATGAGGAGGTTGAAGAGGAAGCGC
CGAAAGATGAGGCAGAGATCCAAGTAGGCGAACCAATGAACGGTCCTCATCAGTTTCGTTTTCTCCGTTTAGAGTCGTTTTTTTTGTTATAAGTCAGTAC
CGTTTGGTCGAAGTTTTATCTTGTTTAATGTTCTGATACATTTTGTTTAGATTCAGTTTGGAGAATCTTCACACTTGGATTATGCTACTGTGTTTTGGTT
ATTAAGATTTCTTTATGTTGATGAATCTCATTTTCTTGGGTGAATTGCTGAT