Detailed information on CNT0031477


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0005984, E-value = 8e-23 (V. vinifera)
CNT0042639, E-value = 1e-21 (A. thaliana)
CNT0018989, E-value = 6e-30 (Z. mays)
CNT0002612, E-value = 1e-30 (G. max)
CNT0022204, E-value = 6e-30 (A. trichopoda)
CNT0013103, E-value = 5e-24 (S. tuberosum)
CNT0037993, E-value = 1e-18 (S. moellendorffii)

Expression of CNT0031477

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)504.823350.7211 252.848424.922424.92346.92452.436445.19434.154shoot (SRR1449240)shoot (SRR1460119)shoot (SRR1460120)stem (SRR1182457)stem (SRR1182458)stem (SRR1182459)stem (SRR1182460)stem (SRR1182461)stem (SRR1182462)010020030040050060070080090010001100120013001400

Peptides detected in this lncRNA

>peptide 1 (56 aa)
SHPVRRLHKSAAADVEREGTESECFAVPAAAMRAKWKKKRMRRLKRKRRKMRQRSK*

>peptide 2 (89 aa)
ISPGSPPPQIRRRRRRERRDRERVLRRPRRRDEGQVEEEENEEAQEEAPKDEAEIQVVVISSVDVFLHHVDRCIWIDGAFGFLMFQLLV*

>peptide 3 (31 aa)
LTRFAASTNPPPPTSREKGQRASASPSPPPR*

Sequence

>CNT0031477
ATCTCACCCGGTTCGCCGCCTCCACAAATCCGCCGCCGCCGACGTCGAGAGAGAAGGGACAGAGAGCGAGTGCTTCGCCGTCCCCGCCGCCGCGATGAGG
GCCAAGTGGAAGAAGAAGAGAATGAGGAGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAGTCGTTATCAGTAGTGTGGATGTCTTCTT
ACATCATGTTGACCGGTGCATTTGGATTGATGGTGCCTTCGGATTCTTGATGTTCCAGTTATTGGTGTAGGAATGTGAAACCTTTTCTGGTTTTGGTTAA
TTCTAGCTGTTGAAATGTCTCTGGTTATGTTCCTAGACTGGAGTATTATGTAATGTGATGACCATAATTCGCTTTATGAAAGTTTATGAGATTTGAAGT