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Detailed information on CNT0044074


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0004080, E-value = 8e-08 (V. vinifera)
CNT0035175, E-value = 4e-16 (P. patens)
CNT0020781, E-value = 9e-11 (Z. mays)
CNT0000254, E-value = 1e-15 (G. max)
CNT0023174, E-value = 9e-11 (A. trichopoda)
CNT0032070, E-value = 1e-09 (O. sativa)
CNT0017109, E-value = 2e-14 (S. tuberosum)
CNT0038248, E-value = 3e-07 (S. moellendorffii)

Expression of CNT0044074

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)52.16256.34648.83653.6919.6287.1046.462.7872.9925.0042.67515.07714.1852.4313.8322.5012.8782.8795.0765.3832.8613.061178.5043.781288.393327.478200.845458.0944.1724.23.5141.5375.081endosperm (SRR068956)endosperm (SRR068957)endosperm (SRR068958)endosperm (SRR068959)floral bud (SRR314815)floral bud (SRR314818)non specified (DRR008476)pollen (SRR847501)pollen (SRR847502)root (SRR314814)root (SRR314817)rosette leaf (ERR754068)rosette leaf (ERR754089)seed (ERR588038)seedling (SRR314813)seedling (SRR314816)seedling (SRR346552)seedling (SRR346553)seedling (SRR847503)seedling (SRR847504)seedling (SRR847505)seedling (SRR847506)seedling (SRR944363)seedling (SRR944364)seedling (SRR944365)seedling (SRR944366)seedling (SRR944367)seedling (SRR944368)seedling (SRR944369)seedling (SRR944370)seedling (SRR944371)seeds (ERR588039)siluge without seeds (ERR588040)0255075100125150175200225250275300325350375400425450475500

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MMMMIMMMRSNNGNYEKNIQKPGHHSEMISYINGQRQTKT*

>peptide 2 (38 aa)
MHHWANQTTTNQNCRNDKRRSDSSFLEKKPLPNKDLIN*

>peptide 3 (45 aa)
MSSLHTFLDIVCLIYDKIIQKLIMFHAIGSYSVKFSDLQVQFTGI*

>peptide 4 (87 aa)
MPSGLIVLSSQIFKFSSRAFNQAEVNMYIGPTSLVNPFLNKAISRVTILLSRVTARNKGSNLVIRSIHHYPEAQALLRYQLSISRSS*

>peptide 5 (83 aa)
MCVCVYIYIYREREREREKERQRQRSRSSNKDNESQQEKTKRHHSNSLESSSQGLNLTKNNNIQLQMINYINTKQQRLVIKEK*

Sequence

>CNT0044074
TAGAGTATTGAACACAACCATAATTGTTTTATCAATTCAGTAATACTTTGAAAATATTATGGCAACAGAAATGTATGCGTCCACGTGTAATAAAGCCCTT
AACACCTAAAGAGAATTCGGAAGAAGACTTATAAGAAGATGTCCAGTCTCCACACTTTTTTGGATATTGTTTGCTTAATTTATGACAAAATAATCCAAAA
GCTGATAATGTTTCATGCCATCGGGTCTTATAGTGTTAAGTTCTCAGATCTTCAAGTTCAGTTCACGGGCATTTAATCAAGCTGAGGTAAATATGTATAT
TGGGCCAACTAGTCTAGTTAACCCGTTTCTGAACAAAGCCATCTCAAGGGTTACAATTTTACTATCTCGCGTAACAGCGAGAAACAAAGGATCAAACTTG
GTAATACGCTCAATACACCACTACCCTGAGGCTCAAGCCTTGTTAAGATATCAATTAAGCATTAGCCGCAGTTCTTAAGCAGTCCAAACAATCTCGAATG
TTTGCTCCAACGCTTCAGCGTCTAGGATTTAATTTTCCGACTTTAAAGAATCAATATTACTAACATAGAAACCAGATATCTATTGACTAGAACTGATAGA
TATGAGAACAACGATTGGACAGATTAAAACCCAAAATTTCAAACTCCTTCACTTTCAGTAATAGACAAATTAAGAAAGAAAAAAACAGAGAATCAAGCCC
TCAGGTCTTAAAAGACAATTGTTTTACAACTTAGTCATAGATGGCACAACGCATTGGCTTCTTCTATGCCAAAGACCATTAAGATCATATCTCCATCGCT
GCAACCAAACATGTATGTGTGTATGTGTATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGACAGAGACAGAGAAGCAGGAGCAG
CAACAAAGATAATGAGTCTCAGCAAGAAAAAACCAAGCGGCACCACTCAAACTCATTAGAGTCATCATCACAGGGCTTAAATCTCACCAAAAATAACAAC
ATACAACTACAAATGATTAACTACATCAATACCAAACAACAAAGATTAGTGATAAAAGAAAAATAGCCCTCAGTATTCACAAAAATCTGTCATATACGGC
GCATCAAAATCAGGTTTTCAAATATACTCAAAGTTACCATTGCAAGAAACCAGTAGTAGCAGCAGCAGCAGAGAACACAAGAAGCAGAGGAAGAAGAAGA
AGAAGAAGACTGTTGAGATGATGATGATGATAATGATGATGAGGAGCAACAATGGTAACTACGAGAAGAACATTCAAAAACCAGGGCACCACTCAGAAAT
GATTTCTTACATCAATGGGCAAAGACAAACCAAAACATAAAAACCGAAACTTTAATTAAAAAACAAAGCCCTCAGATCTCATAGCTATAAATTTGATCAT
TCACGGCTTAGAGTAAATGGGTAAAATCCGGCAACCTAAAAAATCCCTGAACACCACCGTTTCGCATCCGACGCACGTGTGAGACGGATAGATGGTAAGG
GTGGAAGTGTGCGCGTGTGAATGTCGTCGGAGACGAAACGACGGCGTTCAAGGCTATTAGGTTAAAACAACACGCCGGAGATTACCCAAATACAACCGCT
CTATAACATAATTTTATGCATCATTGGGCAAATCAAACAACAACAAACCAAAATTGCAGAAACGATAAAAGAAGATCGGATTCAAGTTTTTTAGAAAAAA
AACCATTACCTAACAAAGATTTGATAAACTAGAAACAAACAAAAAAACAATTACCAAGCAAAATTTCAATAAACTAGAAACAAAAATAGCTAATCGGCGA
GAAGGAAGCCAGGA