Detailed information on CNT0000775 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P69310|UBIQ_AVESA, E-value = 3e-08

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0019050, E-value = 6e-14 (Z. mays)
CNT0030022, E-value = 6e-14 (O. sativa)
CNT0009867, E-value = 2e-10 (S. tuberosum)

Expression of CNT0000775

Peptides detected in this lncRNA

>peptide 1 (43 aa)
VVNGVGGFHLKGDGLAGQSFHEYLHLFNHKKEPSKPGTYVYRL*

>peptide 2 (67 aa)
LSMVSEDSTSRVMVLPVKVFTNICICSITKKNHQNQVHMYIDYRIKKQTPIPQIWKKKKKKKLNYKP*

Sequence

>CNT0000775
CGTTGTCAATGGTGTCGGAGGATTCCACCTCAAGGGTGATGGTCTTGCCGGTCAAAGTTTTCACGAATATCTGCATCTGTTCAATCACAAAAAAGAACCA
TCAAAACCAGGTACATATGTATATCGACTATAGAATAAAAAAACAAACCCCAATACCTCAAATATGGAAGAAGAAGAAGAAGAAGAAATTAAACTACAAG
CCCTAATACCTCAATTAAAAAAATTAAACCACAAAGCCTTACTTTAATGAGGAGAAAGATTAAATCAGGAATCGTAACTAAATTCGGAAAACATATAGCA
TAAACAATCAGATCATGGAATCTGAAAGACAACTGAACGAAT

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA13G17820.1 Uncharacterized protein protein coding CNT0000775 922 342 CDS Cis
GLYMA13G17830.1 Polyubiquitin protein coding CNT0000775 284 111 CDS Trans
GLYMA13G17830.3 Polyubiquitin protein coding CNT0000775 284 111 CDS Trans
GLYMA17G04701.1 Uncharacterized protein protein coding CNT0000775 259 148 CDS Trans
GLYMA17G04701.2 Uncharacterized protein protein coding CNT0000775 259 148 CDS Trans