Parental gene:

emb1507, AT1G20960

Aliases:None
Description:U5 small nuclear ribonucleoprotein helicase, putative [Source:TAIR;Acc:AT1G20960]
Organism:Mouse-ear cress (Arabidopsis thaliana)
Coordinates:1:7301747..7310250(-)


>AT1G20960
ATGGCGAACTTGGGAGGCGGTGCGGAAGCACATGCCAGGTTCAAGCAGTATGAGTACAGAGCCAATTCTAGTCTGGTGTT
AACTACTGATAATAGACCTCGGGATACTCATGAGCCTACAGGAGAACCGGAAACTCTGTGGGGGAAAATCGATCCGAGGT
CTTTTGGTGACCGTGTTGCTAAGGGAAGGCCTCAGGAGTTGGAGGATAAGCTGAAAAAGTCTAAGAAGAAGGAACGTGAT
GTTGTAGATGATATGGTAAATATTAGGCAGAGTAAGAGGCGGCGTCTAAGGGAAGAGAGTGTGCTGACTGATACTGATGA
TGCGGTTTATCAGCCGAAGACTAAGGAGACGAGGGCTGCTTATGAAGCCATGCTTGGTCTTATCCAGAAGCAGTTGGGTG
GGCAACCTCCGAGTATTGTTAGTGGTGCAGCGGATGAGATTTTGGCTGTTCTCAAGAATGACGCATTTAGAAACCCTGAG
AAAAAGATGGAGATTGAGAAGTTGCTGAACAAGATTGAAAACCATGAGTTTGATCAGCTTGTTTCCATTGGAAAGTTAAT
CACGGACTTCCAAGAGGGTGGTGATTCTGGTGGTGGTAGAGCTAATGATGATGAAGGGCTTGATGATGATTTGGGCGTGG
CTGTTGAATTTGAGGAGAATGAAGAAGATGATGAGGAAAGCGATCCTGATATGGTTGAAGAGGATGATGATGAGGAGGAT
GATGAGCCTACCAGAACTGGAGGCATGCAGGTTGATGCAGGGATAAATGATGAGGATGCAGGAGATGCCAATGAGGGCAC
AAATCTTAATGTTCAAGACATTGATGCATATTGGCTCCAGAGAAAGATCTCTCAAGCGTATGAACAGCAGATTGATCCAC
AACAATGCCAGGTACTCGCAGAAGAGCTACTAAAGATACTCGCTGAAGGGGATGATAGGGTTGTTGAGGACAAGCTGCTT
ATGCACCTTCAGTACGAAAAATTTAGCCTTGTCAAGTTTCTGCTGCGTAACCGTCTTAAAGTTGTGTGGTGCACTCGTTT
GGCTAGGGCAGAAGACCAGGAAGAGAGGAATAGAATCGAGGAGGAGATGAGGGGGTTAGGCCCAGAGTTGACAGCAATTG
TGGAGCAGTTGCATGCAACAAGAGCAACAGCGAAAGAGAGGGAGGAGAACCTGCAAAAAAGTATTAACGAGGAAGCCCGG
CGTTTGAAGGACGAAACTGGTGGAGATGGAGGCAGAGGCAGGAGAGATGTTGCTGATAGAGATTCAGAGAGTGGGTGGGT
GAAGGGTCAGCGTCAGATGCTGGACCTGGAGAGCTTGGCTTTTGACCAAGGTGGTCTTCTGATGGCGAATAAGAAGTGTG
ACCTCCCCCCTGGCTCTTACAGAAGTCATGGCAAGGGATATGATGAAGTTCATGTGCCTTGGGTTTCTAAAAAGGTTGAT
AGGAATGAGAAGCTAGTGAAGATTACGGAAATGCCTGATTGGGCGCAACCGGCTTTTAAGGGAATGCAACAGTTGAACAG
GGTTCAGAGCAAAGTGTATGACACTGCGCTTTTCAAGGCAGAGAATATTCTTCTTTGTGCTCCAACTGGTGCTGGGAAAA
CCAATGTTGCTATGCTCACCATACTGCAGCAACTTGAAATGAATAGGAACACAGATGGAACTTATAACCATGGAGATTAC
AAAATTGTCTATGTTGCACCCATGAAAGCCCTTGTTGCTGAAGTTGTAGGTAATTTGTCTAATCGTCTGAAGGATTATGG
AGTTATTGTGAGAGAACTCAGTGGGGATCAGTCCCTAACCGGAAGAGAAATTGAAGAGACTCAGATAATTGTTACAACAC
CAGAGAAATGGGATATCATCACTAGGAAGTCTGGAGACCGAACTTATACTCAGCTTGTGAGACTTCTTATAATTGATGAA
ATTCATCTCCTTCATGACAATCGAGGGCCTGTGCTTGAAAGCATTGTTGCTAGGACTCTTAGGCAAATTGAAACCACGAA
AGAGAATATTCGTCTGGTTGGTTTATCTGCTACATTGCCAAATTATGAAGACGTGGCCTTATTTTTGCGGGTTGATCTTA
AGAAAGGTTTGTTTAAATTTGACCGCAGCTACAGACCCGTGCCTCTCCATCAGCAGTATATTGGAATCAGTGTGAAGAAA
CCGTTGCAGAGGTTCCAGTTGATGAATGATCTTTGTTATCAGAAAGTATTGGCTGGTGCTGGAAAGCACCAGGTCCTTAT
TTTTGTTCATTCAAGGAAGGAAACATCAAAAACTGCTAGAGCAATAAGGGACACTGCAATGGCGAACGATACCCTCAGCA
GATTCTTGAAGGAAGATAGTGTAACTCGTGACGTTCTCCATAGTCATGAAGACATTGTTAAGAATAGTGACCTAAAAGAT
ATTCTGCCTTACGGTTTTGCAATTCATCATGCTGGGTTATCAAGGGGTGATCGTGAGATTGTTGAGACTCTTTTTTCTCA
GGGGCATGTGCAAGTCTTGGTTTCCACAGCAACTCTCGCATGGGGTGTGAATCTGCCTGCACATACCGTAATTATAAAAG
GAACCCAGGTGTATAATCCTGAAAAAGGGGCGTGGATGGAGCTGAGTCCTCTAGATGTTATGCAGATGCTTGGTCGTGCT
GGAAGACCTCAGTATGATCAACATGGGGAGGGTATAATTATAACTGGCTACAGCGAGCTGCAATATTATCTTTCTTTGAT
GAATGAGCAACTACCTATTGAAAGCCAGTTTATTTCCAAACTTGCTGATCAGCTTAATGCTGAAATTGTGCTTGGAACCG
TTCAGAATGCTAGAGAGGCTTGCCATTGGCTTGGTTACACGTATTTGTATATCCGTATGGTTCGTAATCCAACGTTGTAT
GGCTTAGCGCCTGATGCCCTTGCAAAAGACGTAGTTTTGGAGGAGAGAAGAGCTGACCTGATACATTCGGCTGCTACTAT
CTTGGACAAAAACAACTTGGTTAAGTATGACAGGAAAAGTGGATACTTCCAAGTTACAGATTTGGGACGCATAGCAAGCT
ACTATTACATAACCCATGGGACCATAGCTACATACAATGAGCATTTGAAGCCAACAATGGGTGATATAGATCTTTATCGT
CTGTTCTCCCTGAGTGACGAGTTCAAGTATGTGACTGTTCGGCAAGATGAGAAGATGGAACTGGCGAAACTTTTGGATCG
TGTCCCAATTCCGATCAAGGAAACTTTGGAGGAGCCCAGTGCCAAAATAAATGTATTGCTGCAGGCATATATTTCACAGC
TAAAGCTTGAGGGTCTTTCTTTGACATCTGACATGGTTTACATTACGCAGAGTGCTGGACGTCTTGTGCGAGCTCTTTAT
GAAATTGTATTGAAGCGGGGATGGGCTCAATTGGCAGAGAAGGCTCTGAACTTGTCTAAAATGGTAGGGAAGAGGATGTG
GAGTGTTCAGACACCCCTGCGTCAGTTTCATGGACTCTCCAATGATATTTTGATGCAGTTGGAGAAGAAGGATTTGGTGT
GGGAGAGGTACTATGATCTATCCGCACAGGAGCTAGGAGAGCTTATTCGCAGTCCTAAGATGGGCAAGCCGCTTCACAAG
TTCATTCACCAGTTCCCAAAAGTGACTCTTTCTGCACATGTTCAGCCTATTACTCGCACTGTTCTGAATGTGGAGCTTAC
AGTTACACCTGATTTCCTGTGGGACGAGAAAATTCATAAATATGTTGAGCCGTTTTGGATAATTGTGGAAGACAATGATG
GTGAAAAGATCCTTCATCACGAGTATTTTCTTTTGAAGAAGCAGTATATTGATGAGGATCACACTTTGCACTTCACTGTG
CCAATTTTTGAACCGTTGCCACCTCAGTATTTTGTTCGAGTGGTTTCAGACAAGTGGCTTGGCTCGGAGACTGTGTTGCC
TGTATCTTTCAGGCATCTTATTCTTCCAGAGAAGTATCCACCTCCGACAGAGTTACTGGACTTGCAACCTCTCCCAGTGA
CGGCGCTAAGGAATCCGAATTATGAGATACTCTATCAGGATTTCAAGCATTTCAATCCAGTGCAGACTCAGGTCTTTACT
GTTTTGTATAACACTAACGACAATGTGTTGGTTGCTGCTCCAACGGGAAGTGGGAAAACTATTTGTGCGGAGTTCGCTAT
TTTGAGGAATCATCATGAAGGACCTGATGCTACAATGCGTGTTGTTTATATTGCACCACTTGAGGCTATTGCCAAGGAGC
AGTTTCGTATCTGGGAGGGGAAGTTTGGGAAGGGTCTTGGTTTACGGGTTGTTGAGCTAACTGGGGAGACAGCATTGGAT
CTTAAGCTGCTTGAGAAAGGCCAGATAATCATAAGTACTCCTGAGAAATGGGATGCTCTTTCCCGCAGGTGGAAACAGAG
AAAATATGTTCAACAAGTTAGTCTTTTCATCGTCGACGAACTCCATCTAATTGGAGGTCAACATGGTCCAGTGTTGGAGG
TAATCGTTTCCAGAATGAGATATATTTCAAGTCAGGTCATTAATAAGATCAGGATTGTTGCGCTATCCACTTCGCTTGCA
AATGCAAAAGATCTTGGGGAGTGGATTGGGGCCAGTTCCCACGGCCTTTTCAACTTCCCTCCCGGAGTCCGTCCTGTTCC
ACTGGAGATCCACATTCAGGGAGTGGATATATCCAGTTTTGAAGCCAGGATGCAGGCGATGACCAAACCAACCTACACCG
CCATAGTTCAGCACGCCAAGAACAAGAAGCCGGCTATTGTTTTCGTCCCAACCCGTAAACATGTCCGCTTGACTGCTGTG
GATCTGATGGCTTATTCTCACATGGATAACCCGCAGAGTCCTGATTTCTTGTTAGGGAAGCTGGAAGAACTGGACCCTTT
TGTTGAACAAATCCGCGAGGAAACACTGAAGGAGACACTGTGTCATGGTATTGGATACTTGCATGAGGGTTTAAGCAGTC
TGGATCAGGAGATTGTGACACAGCTCTTTGAAGCTGGACGGATTCAGGTTTGTGTGATGAGCAGTTCATTGTGTTGGGGC
ACTCCATTAACTGCGCATTTGGTGGTCGTAATGGGAACGCAGTATTACGATGGGAGGGAAAATTCACATTCTGATTATCC
AGTCCCTGATCTGCTTCAGATGATGGGGCGTGCTAGCCGACCACTTCTTGACAATGCCGGGAAGTGTGTGATCTTTTGTC
ATGCACCGCGGAAGGAGTATTACAAGAAGTTTTTGTACGAAGCCTTCCCTGTGGAAAGTCAGCTCCAGCATTTCTTGCAT
GATAATTTCAACGCAGAAGTGGTTGCTGGGGTTATAGAGAACAAGCAAGATGCCGTGGATTATCTTACATGGACTTTCAT
GTACAGGAGGCTTCCCCAGAACCCTAACTACTACAATCTCCAAGGTGTTAGCCACAGGCATTTGTCTGATCACCTATCAG
AGCTGGTTGAGAACACCTTGTCTGATCTTGAAGCCAGTAAATGCATTGAGGTAGAGGATGAGATGGAACTCTCTCCTCTC
AACCTTGGTATGATTGCATCCTATTATTACATCAGTTATACCACCATTGAGCGCTTCAGTTCACTGTTGTCTTCTAAAAC
CAAGATGAAGGGACTTCTTGAAATCTTAACATCGGCTTCAGAGTATGACATGATTCCTATACGGCCTGGCGAAGAGGACA
CCGTTCGAAGATTAATCAATCACCAGAGGTTCTCTTTTGAAAACCCAAAATGCACAGACCCTCATGTGAAGGCAAACGCG
CTTCTTCAGGCGCATTTCTCAAGGCAAAACATTGGCGGGAACTTGGCAATGGATCAGCGTGATGTCCTTCTATCTGCAAC
CAGACTTCTTCAAGCGATGGTCGATGTGATATCAAGCAATGGCTGGCTGAATCTTGCTCTGCTAGCTATGGAAGTAAGCC
AGATGGTGACTCAAGGCATGTGGGAGCGGGACTCCATGCTTCTGCAGCTCCCTCACTTCACAAAAGACTTGGCCAAGAGG
TGCCAGGAGAATCCAGGGAAAAACATTGAAACCGTATTCGATCTTGTGGAGATGGAGGATGAAGAACGCCAAGAGCTTCT
CAAGATGTCAGACGCTCAGCTTCTAGACATTGCCAGATTCTGCAACCGCTTCCCAAACATCGACCTTACTTACGAGATTG
TGGGCAGTGAAGAGGTGAACCCAGGGAAAGAGGTTACATTGCAAGTGATGCTTGAGAGAGACATGGAGGGGAGGACAGAA
GTGGGACCTGTGGATTCACTGAGGTATCCCAAGACCAAAGAAGAAGGATGGTGGCTGGTCGTGGGCGACACCAAGACAAA
CCAGTTGCTGGCAATCAAGCGTGTCTCATTGCAACGGAAAGTGAAGGTGAAGCTGGATTTCACAGCACCGAGTGAACCAG
GAGAGAAGTCATACACACTATACTTCATGTGTGACTCTTACTTGGGGTGTGACCAAGAGTACTCGTTCTCTGTTGATGTC
AAAGGATCCGGCGCTGGAGATCGCATGGAAGAATGA

Species Parental gene accession Homology type Retrogenes number
Arabidopsis lyrata fgenesh2_kg.1__2288__AT1G20960.1 ortholog_one2many 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_atha_3 82.81 100.00
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Download FASTA sequences of all AT1G20960 retrocopies