Common name: Chicken
Latin name: Gallus gallus
Genome assembly: Galgal4
All retrocopies: 25
Parental genes: 25

Summary: Number of retrocopies :
Conserved ORF: 15 ORF 10 ORF
Expressed retrocopies (RNA-Seq): 14 RNA-Seq 11 RNA-Seq
Expressed retrocopies (EST): 4 EST 21 EST

# RetrogeneDB ID Identity Coverage ORF conservation Expression evidence
1. retro_ggal_1 52.54 % 51.08 % ORF EST RNA-Seq
2. retro_ggal_2 53.98 % 80.99 % ORF EST RNA-Seq
3. retro_ggal_3 71.54 % 100.00 % ORF EST RNA-Seq
4. retro_ggal_4 62.26 % 98.93 % ORF EST RNA-Seq
5. retro_ggal_5 86.39 % 98.96 % ORF EST RNA-Seq
6. retro_ggal_6 99.20 % 99.73 % ORF EST RNA-Seq
7. retro_ggal_7 69.43 % 86.74 % ORF EST RNA-Seq
8. retro_ggal_8 89.10 % 96.28 % ORF EST RNA-Seq
9. retro_ggal_9 87.84 % 100.00 % ORF EST RNA-Seq
10. retro_ggal_10 54.58 % 77.58 % ORF EST RNA-Seq
11. retro_ggal_11 84.09 % 61.62 % ORF EST RNA-Seq
12. retro_ggal_12 67.89 % 52.37 % ORF EST RNA-Seq
13. retro_ggal_13 66.21 % 99.31 % ORF EST RNA-Seq
14. retro_ggal_14 54.80 % 90.26 % ORF EST RNA-Seq
15. retro_ggal_15 77.55 % 57.31 % ORF EST RNA-Seq
16. retro_ggal_16 80.94 % 92.98 % ORF EST RNA-Seq
17. retro_ggal_17 71.60 % 53.69 % ORF EST RNA-Seq
18. retro_ggal_18 63.86 % 56.27 % ORF EST RNA-Seq
19. retro_ggal_19 83.33 % 100.00 % ORF EST RNA-Seq
20. retro_ggal_20 52.94 % 79.06 % ORF EST RNA-Seq
21. retro_ggal_21 99.45 % 56.13 % ORF EST RNA-Seq
22. retro_ggal_22 78.21 % 83.78 % ORF EST RNA-Seq
23. retro_ggal_23 92.45 % 78.20 % ORF EST RNA-Seq
24. retro_ggal_24 75.47 % 51.29 % ORF EST RNA-Seq
25. retro_ggal_25 64.40 % 100.00 % ORF EST RNA-Seq
# Ensembl ID Symbol Description
1. ENSGALG00000026574 POUV POU domain class 5 transcription factor 1 [Source:RefSeq peptide;Acc:NP_001103648]
2. ENSGALG00000011311 ANKRD13C ankyrin repeat domain 13C [Source:HGNC Symbol;Acc:25374]
3. ENSGALG00000009621 gga-mir-3533 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
4. ENSGALG00000005393 ARF1 ADP-ribosylation factor 1 [Source:RefSeq peptide;Acc:NP_001006352]
5. ENSGALG00000009250 HNRNPA3
6. ENSGALG00000006512 HSPA8 heat shock cognate 71 kDa protein [Source:RefSeq peptide;Acc:NP_990334]
7. ENSGALG00000003806 CRHOA transforming protein RhoA [Source:RefSeq peptide;Acc:NP_990035]
8. ENSGALG00000003947 HNRNPH3 heterogeneous nuclear ribonucleoprotein H3 [Source:RefSeq peptide;Acc:NP_001012610]
9. ENSGALG00000028131 GINS2 GINS complex subunit 2 (Psf2 homolog) [Source:HGNC Symbol;Acc:24575]
10. ENSGALG00000008852 DNAJC19
11. ENSGALG00000028749 ACTG1 Actin, cytoplasmic 2 Actin, cytoplasmic 2, N-terminally processed [Source:UniProtKB/Swiss-Prot;Acc:Q5ZMQ2]
12. ENSGALG00000001000 HSPA5 78 kDa glucose-regulated protein [Source:UniProtKB/Swiss-Prot;Acc:Q90593]
13. ENSGALG00000026445 CALM Calmodulin [Source:UniProtKB/Swiss-Prot;Acc:P62149]
14. ENSGALG00000012694 C12orf45 chromosome 12 open reading frame 45 [Source:HGNC Symbol;Acc:28628]
15. ENSGALG00000002908 TRAIP TRAF-interacting protein [Source:RefSeq peptide;Acc:NP_001025757]
16. ENSGALG00000006728 SLC5A1
17. ENSGALG00000004039 MINOS1
18. ENSGALG00000008314 ARL8A ADP-ribosylation factor-like protein 8A [Source:RefSeq peptide;Acc:NP_001012886]
19. ENSGALG00000003755 VDAC3
20. ENSGALG00000001501 MAPK1 mitogen-activated protein kinase 1 [Source:RefSeq peptide;Acc:NP_989481]
21. ENSGALG00000010725 YWHAZ 14-3-3 protein zeta [Source:UniProtKB/Swiss-Prot;Acc:Q5ZKC9]
22. ENSGALG00000028047 RHOV
23. ENSGALG00000001843 PIAS2 E3 SUMO-protein ligase PIAS2 [Source:RefSeq peptide;Acc:NP_001025797]
24. ENSGALG00000013382 SCO1 SCO1 cytochrome c oxidase assembly protein [Source:HGNC Symbol;Acc:10603]
25. ENSGALG00000000660 CYB5B outer mitochondrial membrane cytochrome b5 [Source:RefSeq peptide;Acc:NP_001025752]
Retrogenes FASTA BED
TSV (download all or selected columns from MySQL table)
Parental genes FASTA BED
TSV (download all or selected columns from MySQL table)