Parental gene:

SLC5A1, ENSGALG00000006728

Aliases:None
Description:None
Organism:Chicken (Gallus gallus)
Coordinates:15:8768959..8794948(-)


>ENSGALG00000006728
ATGGAATCCACCGCCATAAGGATCAACAATGCTGCGGACATCTCTGTTATTGTCATCTATTTTGTGGTAGTCCTGGCAGT
GGGAGTATGGGCTATGTACTCAACCAACCGAGGGACAGTAGGTGGATTCTTTCTGGCTGGACGGAGCATGGTTTGGTGGC
CGATCGGTGCTTCACTCTTTGCCAGTAACATTGGCAGTGGACATTTTGTGGGCATAGCAGGAACAGCAGCAGCTGGTGGA
ATTGCCATTGGAGGGTATGAATGGAATGCTCTGATATTTGTGGTTGTTCTAGGATGGGTGTTTGTACCCATCTACATCAA
AGCTGGGGTGGTGACAATGCCGGAGTATCTGAGGAAGCGTTTTGGTGGGAAACGGATTCAGGTCTACCTGTCAATCCTTT
CACTGATCCTGTATATTTTCACAAAGATCTCAGCAGACATATTCTCTGGAGCTGTGTTTATACAGTTGGCCATGGGGCTG
AATTTGTATTTGGCCATTATTATCCTGCTTGCTATTACTGCTCTTTACACCATTACAGGTGGCCTTGCAGCTGTGATTTA
CACAGATACCTTGCAGACGTTTATCATGGTTGTGGGATCTTTCATTCTCATGGGATTTGCATTTAGAGAGGTTGGAGGGT
ATGATGCCTTCATGGAGAAGTATATGAATGCAGTTCCATCCAATATCACCTATGGAAATAGTACAATTGATTCAAAATGC
TATACGCCTCGAGCAGATTCTTTTCACATCTTCCGAGATGCTGTCACTGGAGATCTGCCGTGGCCAGGGCTTACTATTGG
TTTGAGCATCCTTACTCTGTGGTACTGGTGCACAGATCAGGTTATTGTCCAAAGATGTCTCTCTGGCAAGAACATGTCCC
ACGTGAAGGCTGGATGTGTGATGTGCGGATACCTGAAGCTCTTGCCCATGTTTATCATAGTGATGCCTGGAATGATCAGC
CGAATTTTGTATACAGATGTGGTGGCTTGTGCTGTGCCTGAAATCTGCCAGCAGGCCTGTGGCACCACAGTTGGCTGTAC
AAATATTGCTTATCCAAAAATGGTAGTGGAGCTTATGCCAAATGGTCTACGAGGTCTGATGTTATCAGTCATGTTGGCAT
CCCTTATGAGCTCCTTGACTTCCATTTTTAACAGTGCTAGTACACTGTTCACTATGGACATTTACACCAAAGTTAGAAAA
CAACCATCAGAGAAAGAGCTTATGTTGGCTGGAAGGGCATTTATGGTGGTTTTAATTGGCATCAGCATCGCCTGGGTTCC
TGTGGTGCAGTCAGCTCAAAGCGGGCAGCTCTTTGATTACATTCAGTCGGTTACCAGCTACCTGGGACCTCCCATTGCTG
CTGTCTTCCTGCTTGCCATCTTCTGCAAGCGAGTAAATGAGCAGGGTGCCTTCTGGGGCCTGGTTGTTGGGCTGCTGGCT
GGGCTCGGTAGAATGATATCAGAGTTTGCCTATGGAACTGGTAGCTGTGTGGCCCCTTCCAACTGTCCGTTCATCATCTG
TGGGATTCACTACCTTTACTTTGCAATTATTCTTTTTGGGATTTCTGCCATTGTTATCCTGGCAGTCTCCTTCATGACTA
AGCCGATTCCTGATGTACATCTTTATCGCTTGTGCTGGTCTTTGCGGAACAGCAAAGAGGAACGCATTGATCTTGATGCA
GATGATGAGGAGGAGAAACCCGATGAAAGAGATAAGGAATCAGTTTCAGAGGAAAGTGAAGACCCAGGATGCCTAAAGAA
AGCTTACAACTGGTTCTGTGGCTTAGACCAACAAAAAGGACCCAAACTGAGCAAGGAGGAAGAGGAAGCGCTGAAGAAGA
AACTGACTGACACATCAGAAGTGCCACTTTGGAGGAATGTTGTGAATATCAACGGCATCATCCTACTGACTGTGGCTGTA
TTTTGCCATGCCTTTTTTGCATAG

Library Parental gene expression (RPM)
SRP007412_brain 0 .85 RPM
SRP007412_cerebellum 1 .27 RPM
SRP007412_heart 0 .39 RPM
SRP007412_kidney 45 .29 RPM
SRP007412_liver 1 .36 RPM
SRP007412_testis 24 .89 RPM



Species Parental gene accession Homology type Retrogenes number
Anas platyrhynchos ENSAPLG00000007944 ortholog_one2many 1 retrogene
retro_apla_5,
Choloepus hoffmanni ENSCHOG00000005940 ortholog_one2many 1 retrogene
retro_chof_2,
Callithrix jacchus ENSCJAG00000011369 ortholog_one2one 1 retrogene
retro_cjac_2033,
Ficedula albicollis ENSFALG00000007384 ortholog_one2one 1 retrogene
retro_falb_29,
Homo sapiens ENSG00000100170 ortholog_one2many 1 retrogene
retro_hsap_105,
Microcebus murinus ENSMICG00000008997 ortholog_one2many 1 retrogene
retro_mmur_1306,
Monodelphis domestica ENSMODG00000009915 ortholog_one2many 1 retrogene
retro_mdom_1324,
Mustela putorius furo ENSMPUG00000012749 ortholog_one2many 1 retrogene
retro_mputfur_837,
Oryctolagus cuniculus ENSOCUG00000017569 ortholog_one2many 1 retrogene
retro_ocun_1633,
Otolemur garnettii ENSOGAG00000003370 ortholog_one2many 1 retrogene
retro_ogar_2513,
Ochotona princeps ENSOPRG00000010458 ortholog_one2many 1 retrogene
retro_opri_6,
Procavia capensis ENSPCAG00000015157 ortholog_one2one 1 retrogene
retro_pcap_3,
Rattus norvegicus ENSRNOG00000017775 ortholog_one2many 1 retrogene
retro_rnor_794,
Ictidomys tridecemlineatus ENSSTOG00000006386 ortholog_one2many 1 retrogene
retro_itri_13,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggal_2 53.98 80.99
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Download FASTA sequences of all ENSGALG00000006728 retrocopies