RetrogeneDB ID: | retro_ggal_6 | ||
Retrocopylocation | Organism: | Chicken (Gallus gallus) | |
Coordinates: | 10:2014384..2015515(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGALG00000001381 | |
Aliases: | ACTG1, actin, cytoplasmic | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTG1 | ||
Ensembl ID: | ENSGALG00000028749 | ||
Aliases: | None | ||
Description: | Actin, cytoplasmic 2 Actin, cytoplasmic 2, N-terminally processed [Source:UniProtKB/Swiss-Prot;Acc:Q5ZMQ2] |
Percent Identity: | 99.2 % |
Parental protein coverage: | 99.73 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI |
.EEIAALV.DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI | |
Retrocopy | DEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI |
Parental | EHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS |
EHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS | |
Retrocopy | EHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS |
Parental | LYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD |
LYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD | |
Retrocopy | LYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD |
Parental | IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNS |
IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEA.FQPSFLGMESCGIHETTFNS | |
Retrocopy | IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEAIFQPSFLGMESCGIHETTFNS |
Parental | IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST |
IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST | |
Retrocopy | IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST |
Parental | FQQMWISKQEYDESGPSIVHRKCF |
FQQMWISKQEYDESGPSIVHRKCF | |
Retrocopy | FQQMWISKQEYDESGPSIVHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 197 .97 RPM | 1734 .80 RPM |
SRP007412_cerebellum | 121 .58 RPM | 1332 .59 RPM |
SRP007412_heart | 45 .94 RPM | 644 .54 RPM |
SRP007412_kidney | 86 .50 RPM | 1913 .62 RPM |
SRP007412_liver | 39 .61 RPM | 2363 .64 RPM |
SRP007412_testis | 313 .78 RPM | 790 .60 RPM |
EST ID | Start | End | Identity | Match | Mis-match | Score |
---|---|---|---|---|---|---|
BI390778 | 2014373 | 2015000 | 99.9 | 621 | 1 | 620 |
Species | RetrogeneDB ID |
---|---|
Meleagris gallopavo | retro_mgal_5 |