Common name: Western balsam poplar
Latin name: Populus trichocarpa
Genome assembly: JGI2.0
All retrocopies: 30
Parental genes: 26

Summary: Number of retrocopies :
Conserved ORF: 20 ORF 10 ORF

# RetrogeneDB ID Identity Coverage ORF conservation
1. retro_ptri_1 72.17 % 90.27 % ORF
2. retro_ptri_2 67.99 % 91.12 % ORF
3. retro_ptri_3 81.98 % 97.52 % ORF
4. retro_ptri_4 74.77 % 94.69 % ORF
5. retro_ptri_5 60.49 % 75.00 % ORF
6. retro_ptri_6 59.72 % 96.75 % ORF
7. retro_ptri_7 53.94 % 53.59 % ORF
8. retro_ptri_8 51.25 % 99.58 % ORF
9. retro_ptri_9 56.20 % 96.48 % ORF
10. retro_ptri_10 84.70 % 59.13 % ORF
11. retro_ptri_11 61.28 % 90.38 % ORF
12. retro_ptri_12 57.93 % 99.38 % ORF
13. retro_ptri_13 54.08 % 99.29 % ORF
14. retro_ptri_14 97.85 % 99.09 % ORF
15. retro_ptri_15 67.76 % 96.57 % ORF
16. retro_ptri_16 97.37 % 100.00 % ORF
17. retro_ptri_17 86.52 % 84.39 % ORF
18. retro_ptri_18 93.16 % 97.50 % ORF
19. retro_ptri_19 51.10 % 78.50 % ORF
20. retro_ptri_20 51.41 % 95.27 % ORF
21. retro_ptri_21 53.50 % 60.23 % ORF
22. retro_ptri_24 73.60 % 64.90 % ORF
23. retro_ptri_29 81.08 % 74.75 % ORF
24. retro_ptri_33 52.70 % 82.58 % ORF
25. retro_ptri_35 80.57 % 96.11 % ORF
26. retro_ptri_37 60.54 % 52.90 % ORF
27. retro_ptri_38 59.75 % 57.82 % ORF
28. retro_ptri_39 54.71 % 58.89 % ORF
29. retro_ptri_40 54.51 % 83.62 % ORF
30. retro_ptri_44 60.40 % 58.77 % ORF
# Ensembl ID Symbol Description
1. POPTR_0002s21490 POPTRDRAFT_755875 RNAse II-like 1 [Source:Projected from Arabidopsis thaliana (AT4G15417) TAIR;Acc:AT4G15417]
2. POPTR_0001s40270 POPTRDRAFT_672511 Predicted protein [Source:UniProtKB/TrEMBL;Acc:B9N633]
3. POPTR_0001s06560
4. POPTR_0017s11850 POPTRDRAFT_823446 Predicted protein [Source:UniProtKB/TrEMBL;Acc:A9P8R1]
5. POPTR_0009s05010 POPTRDRAFT_804506 Predicted protein [Source:UniProtKB/TrEMBL;Acc:B9HP45]
6. POPTR_0019s11350 POPTRDRAFT_665771 ubiquitin-conjugating enzyme 11 [Source:Projected from Arabidopsis thaliana (AT3G08690) TAIR;Acc:AT3G08690]
7. POPTR_0011s04490 POPTRDRAFT_234069 Predicted protein [Source:UniProtKB/TrEMBL;Acc:B9HYY4]
8. POPTR_0001s40090 POPTRDRAFT_746459 Predicted protein [Source:UniProtKB/TrEMBL;Acc:A9PIK1]
9. POPTR_0018s06860 POPTRDRAFT_582957 Predicted protein [Source:UniProtKB/TrEMBL;Acc:B9N5G9]
10. POPTR_0013s05030 POPTRDRAFT_729942 Aquaporin, MIP family, SIP subfamily [Source:UniProtKB/TrEMBL;Acc:B9I5U1]
11. POPTR_0011s13810 POPTRDRAFT_569089 Predicted protein [Source:UniProtKB/TrEMBL;Acc:A9P9X9]
12. POPTR_0014s12370 POPTRDRAFT_709823 Predicted protein [Source:UniProtKB/TrEMBL;Acc:A9P8H8]
13. POPTR_0011s11210
14. POPTR_0006s19540
15. POPTR_0006s12740 POPTRDRAFT_836228 Predicted protein [Source:UniProtKB/TrEMBL;Acc:B9MTE3]
16. POPTR_0008s11670 POPTRDRAFT_419696 Predicted membrane protein [Source:UniProtKB/TrEMBL;Acc:B9HJ03]
17. POPTR_0002s01410 POPTRDRAFT_642844 Predicted protein [Source:UniProtKB/TrEMBL;Acc:B9GQ38]
18. POPTR_0010s08230 High affinity inorganic phosphate transporter [source:UniProtKB/TrEMBL;Acc:B9NBW6_POPTR]
19. POPTR_0018s09030
20. POPTR_0012s12400
21. POPTR_0002s22260 POPTRDRAFT_755806 Predicted protein [Source:UniProtKB/TrEMBL;Acc:B9GTF7]
22. POPTR_0001s44610 POPTRDRAFT_571511 Predicted protein [Source:UniProtKB/TrEMBL;Acc:B9I7M3]
23. POPTR_0006s01590 POPTRDRAFT_818946 Predicted protein [Source:UniProtKB/TrEMBL;Acc:B9HCU5]
24. POPTR_0001s41790 POPTRDRAFT_784905 Predicted protein [Source:UniProtKB/TrEMBL;Acc:B9N575]
25. POPTR_0006s08620 POPTRDRAFT_762363 ABC transporter family protein [Source:UniProtKB/TrEMBL;Acc:B9HBM3]
26. POPTR_0015s05560 POPTRDRAFT_265682 Predicted protein [Source:UniProtKB/TrEMBL;Acc:B9N364]
Retrogenes FASTA BED
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Parental genes FASTA BED
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