Parental gene:

POPTR_0018s09030

Aliases:None
Description:None
Organism:Western balsam poplar (Populus trichocarpa)
Coordinates:18:9905442..9906784(-)


>POPTR_0018s09030
ATGGCCCCGATCGCTGTTGGTGATGTCTTGCCTGATGGAAAGCTCGCTTATTTCGACGAGCAAGATCAGCTCCAGGAAGT
GTCCGTACACTCTCTAGTTGCCGGTAAAAAGGTCATCCTCTTTGGTGTTCCCGGTGCCTTCACCCCCACCTGCAGCTTGA
AGCATGTGCCGGGGTTTATCGAGAAAGCAGGGGAGTTAAAATCAAAGGGCGTTACTGAAATTTTGTGCATCAGCGTCAAC
GACCCCTTTGTGATGAAGGCATGGGCCAAATCTTACCCTGAGAATAAGCATGTCAAATTCTTAGCTGATGGGTCTGCAAC
GTACACCCATGCTCTCGGCCTTGAGCTTGACCTGCAAGAGAAAGGGCTTGGCACACGTTCTAGGAGGTTTGCTCTCTTGG
TTGATGACCTTAAGGTGAAAGCTGCAAATATTGAAGGGGGTGGAGAATTCACTGTGTCCAGTGCCGATGATATCCTCAAG
GATCTTTGA

Species Parental gene accession Homology type Retrogenes number
Arabidopsis thaliana AT1G65980 ortholog_many2many 1 retrogene
retro_atha_13,
Arabidopsis lyrata fgenesh2_kg.2__836__AT1G65980.1 ortholog_many2many 1 retrogene
retro_alyr_5,
Glycine max GLYMA07G09240 ortholog_many2many 1 retrogene
retro_gmax_12,
Hordeum vulgare MLOC_12954 ortholog_one2many 1 retrogene
retro_hvul_9,
Prunus persica PRUPE_ppa012586mg ortholog_one2many 1 retrogene
retro_pper_22,
Sorghum bicolor Sb03g030950 ortholog_one2many 1 retrogene
retro_sbic_22,
Selaginella moellendorffii SELMODRAFT_159225 ortholog_many2many 1 retrogene
retro_smoe_4,
Solanum lycopersicum Solyc07g020860.2 ortholog_one2many 1 retrogene
retro_slyc_41,
Theobroma cacao TCM_028816 ortholog_one2many 1 retrogene
retro_tcac_8,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptri_12 57.93 99.38
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Download FASTA sequences of all POPTR_0018s09030 retrocopies