Parental gene:

PSMC1, ENSAMEG00000001839

Aliases:None
Description:None
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL192787.1:1155435..1164975(-)


>ENSAMEG00000001839
CAGGGTCAGAGTCAGAGTGGTGGTCATGGCCCTGGAGGTGGCAAGAAGGATGACAAGGACAAGAAAAAGAAATACGAACC
TCCTGTGCCAACCAGAGTGGGGAAAAAGAAGAAGAAAACAAAGGGACCAGATGCTGCCAGCAAGCTACCCCTGGTGACCC
CTCACACTCAGTGCCGGTTAAAATTATTGAAGTTAGAGAGAATTAAAGACTATCTTCTCATGGAGGAAGAATTCATTAGA
AATCAGGAACAAATGAAGCCTTTAGAAGAAAAGCAAGAGGAGGAAAGATCTAAGGTGGATGATCTGAGGGGGACCCCAAT
GTCAGTAGGAACCTTGGAAGAGATTATCGATGACAATCATGCCATCGTGTCTACATCTGTGGGCTCAGAACACTACGTCA
GCATTCTTTCCTTTGTAGACAAGGATCTGCTGGAACCAGGCTGCTCCGTCCTCCTCAACCACAAGGTGCATGCTGTCATA
GGGGTGCTCATGGATGACACGGATCCCTTGGTCACAGTGATGAAGGTAGAAAAGGCGCCCCAGGAAACCTATGCTGATAT
CGGGGGGTTGGACAACCAAATCCAGGAGATTAAGGAATCTGTGGAGCTTCCTCTCACTCATCCTGAATATTATGAAGAGA
TGGGTATAAAGCCCCCAAAGGGGGTCATTCTCTATGGCCCACCTGGCACAGGTAAAACCTTACTAGCCAAAGCAGTAGCA
AACCAAACCTCAGCCACTTTCTTGAGAGTGGTTGGCTCTGAACTGATTCAGAAGTACCTAGGTGACGGGCCCAAGCTTGT
TCGGGAATTGTTTCGAGTTGCAGAAGAACACGCACCATCCATCGTGTTTATTGATGAAATTGATGCCATTGGAACAAAAA
GATACGATTCAAATTCTGGTGGTGAGAGAGAAATTCAACGAACAATGTTGGAGCTGCTGAACCAATTGGATGGATTTGAT
TCGAGGGGTGACGTGAAAGTTATCATGGCCACAAACCGAATAGAGACTCTGGATCCGGCCCTTATCAGACCAGGCCGCAT
CGACAGGAAGATCGAGTTCCCCTTGCCGGATGAAAAGACCAAGAAGCGCATCTTCCAGATCCACACAAGCAGGATGACGC
TGGCTGATGACGTGACCCTGGACGACCTGATCATGGCTAAAGATGACCTCTCTGGTGCCGACATCAAGGCGATCTGTACA
GAAGCTGGTCTGATGGCCTTGAGAGAACGGAGAATGAAAGTGACCAATGAAGACTTCAAGAAATCTAAAGAAAATGTTCT
TTATAAGAAACAAGAAGGCACCCCTGAGGGGCTGTATCTCTAG

Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000017510 ortholog_one2many 2 retrogenes
retro_cfam_1238, retro_cfam_1562,
Choloepus hoffmanni ENSCHOG00000013595 ortholog_one2one 1 retrogene
retro_chof_1954,
Dasypus novemcinctus ENSDNOG00000006458 ortholog_one2one 1 retrogene
retro_dnov_2162,
Equus caballus ENSECAG00000003601 ortholog_one2one 1 retrogene
retro_ecab_355,
Echinops telfairi ENSETEG00000002661 ortholog_one2one 1 retrogene
retro_etel_580,
Felis catus ENSFCAG00000011310 ortholog_one2one 8 retrogenes
retro_fcat_1444, retro_fcat_1559, retro_fcat_2015, retro_fcat_344, retro_fcat_614, retro_fcat_691, retro_fcat_713, retro_fcat_924,
Macropus eugenii ENSMEUG00000001526 ortholog_one2one 1 retrogene
retro_meug_623,
Myotis lucifugus ENSMLUG00000007471 ortholog_one2one 2 retrogenes
retro_mluc_2490, retro_mluc_508,
Macaca mulatta ENSMMUG00000022990 possible_ortholog 1 retrogene
retro_mmul_255,
Mustela putorius furo ENSMPUG00000008150 ortholog_one2one 4 retrogenes
retro_mputfur_1602, retro_mputfur_409, retro_mputfur_654, retro_mputfur_815,
Mus musculus ENSMUSG00000021178 ortholog_one2one 3 retrogenes
retro_mmus_1517, retro_mmus_1826, retro_mmus_812,
Oryctolagus cuniculus ENSOCUG00000006231 ortholog_one2one 4 retrogenes
retro_ocun_1135, retro_ocun_1212, retro_ocun_1654, retro_ocun_411,
Otolemur garnettii ENSOGAG00000032343 possible_ortholog 2 retrogenes
retro_ogar_3014, retro_ogar_367,
Pongo abelii ENSPPYG00000025948 possible_ortholog 9 retrogenes
retro_pabe_1059, retro_pabe_153, retro_pabe_2379, retro_pabe_2408, retro_pabe_2737, retro_pabe_2832, retro_pabe_3099, retro_pabe_825, retro_pabe_907,
Pteropus vampyrus ENSPVAG00000010020 ortholog_one2one 3 retrogenes
retro_pvam_1190, retro_pvam_350, retro_pvam_500,
Tursiops truncatus ENSTTRG00000013582 ortholog_one2one 1 retrogene
retro_ttru_239,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_amel_405 78.31 66.36
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_amel_962 86.74 85.00
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_amel_1536 78.68 61.59
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_amel_1886 77.27 58.86
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSAMEG00000001839 retrocopies