RetrogeneDB ID:

retro_mputfur_1602

Retrocopy
location
Organism:Ferret (Mustela putorius furo)
Coordinates:GL897327.1:428410..429722(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMPUG00000001607
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:PSMC1
Ensembl ID:ENSMPUG00000008150
Aliases:None
Description:proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Source:HGNC Symbol;Acc:9547]


Retrocopy-Parental alignment summary:






>retro_mputfur_1602
ATGGGTCAGAGTCAGAGTGGTGGTCATGCCCCTGTAGGTGGCAAGAAGGATAACAAAGACAAGAAAAAGAAATATGAACC
TTCTGCACCAACCAGAGTAGGGAAAAAGAAGAAGAAAACAAAGGAACCAGATGCTACCAGCAAGCTGCCACTGGTGACAC
ATCACACTCAGTACCATTTAAAATTATTGAAGTTAGAATTGAATACTATCTTCTCACGGAGGAAGAATTCATTAGAAATC
AGGAACAAATGAAGCCTTTAGAAGAAAAGCAAGAGGAGGAAAGATTTAAGAGTGGATGATCTGAGGGGGACCCCAAAGTC
AATAGGAAACTTGGAAGAGATCCCTGTTGACAATCGTGTTATCCTGTCTACATCTGTGGGCTCAGAACACTGCATAAGTA
TTCTTTCCTTTGTAGACAAAGATCTACTGGAACCAGGCTGCTCCATCCTGATCAACCACAAGGTACATGCCATCCATGTG
CTCATGGATGACACAGATCCCTTGGTCACAGTGATGAAGGTAGAAAAGTCACTCCAAGAAACCTATGCTGATACTGGGCG
GCTGGACAACCAAATCCAGGAAATTAAGGAATCTGCAGAGCTTCCTCTCACTCATCCTGAATATTATGAAGAGATGGTAT
AAAGCCCCCAGAAGGCATTATTCTCTATGGTCCATCTGGCACAAGTAAAACTTTATTAGCCAATGCAGTAGCAAACCAAT
CCTCAGCCACCTTCTTGAGAGTGGTTGGCTCTGAACTTATTCAGAAGTTCCCAGGTCACGGGCCCAAACTAGTTCGGAAA
TTGTTTCCAGTTGTGGAAGAACATGCACCAACCACCATGTTTACTGATGGAATTCATGCCATTGGAACAAAAAGATACAA
GTCAAATTCTGGTGGTGAGAGAGAAATTCAGCAAACAATGTTGGAACTGCTGAGCCAATTGGATGGAGTTGATTTGAGGG
ATGATATGAAAGTTATCGCAGCCACAGACCAAACTGAGACTCTGGATATGGCCCTTATCAGACCAGGTTGCATCAACAGG
AAGCCTGAATTCCCTCAGCCTGACAAAAAGACTAAGAAGTACATCTTTCAGATCCACACAAGCAGGGTGACACTAGCTGA
TGATGGGACTCCAGACGACTTGATCATGACTAAAGATACCTCTTGGGTGCTAACATCAAGGCAATTTGTACAGAAACTGG
TGTGATGGCCTTCAGAGAATGTAGAATGAAAGTAACAAATGAAGACTTCAAGAAATCTAAAGAAAATGCTCTTTATAAAA
AGCAAGAAGGCATTCCTGAGGGACTGTTTCTC

ORF - retro_mputfur_1602 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 79.28 %
Parental protein coverage: 100.0 %
Number of stop codons detected: 0
Number of frameshifts detected: 4


Retrocopy - Parental Gene Alignment:

ParentalMGQSQSGGHGPGGGKKDDKDKKKKYEPPVPTRVGKKKKKTKGPDAASKLPLVTPHTQCRL-KLLKLERIK
MGQSQSGGH.P.GGKKD.KDKKKKYEP..PTRVGKKKKKTK.PDA.SKLPLVT.HTQ..L.K.....RI.
RetrocopyMGQSQSGGHAPVGGKKDNKDKKKKYEPSAPTRVGKKKKKTKEPDATSKLPLVTHHTQYHL<KIIEV-RIE
ParentalDYLLMEEEFIRNQEQMKPLEEKQEEERSK-VDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSF
.YLL.EEEFIRNQEQMKPLEEKQEEER.K.VDDLRGTP.S.G.LEEI..DN..I.STSVGSEH..SILSF
RetrocopyYYLLTEEEFIRNQEQMKPLEEKQEEERFK>VDDLRGTPKSIGNLEEIPVDNRVILSTSVGSEHCISILSF
ParentalVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHP
VDKDLLEPGCS.L.NHKVHA.I.VLMDDTDPLVTVMKVEK..QETYAD.G.LDNQIQEIKES.ELPLTHP
RetrocopyVDKDLLEPGCSILINHKVHA-IHVLMDDTDPLVTVMKVEKSLQETYADTGRLDNQIQEIKESAELPLTHP
ParentalEYYEEM-GIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH
EYYEEM.GIKPP.G.ILYGP.GT.KTLLA.AVANQ.SATFLRVVGSELIQK..G.GPKLVR.LF.V.EEH
RetrocopyEYYEEM<GIKPPEGIILYGPSGTSKTLLANAVANQSSATFLRVVGSELIQKFPGHGPKLVRKLFPVVEEH
ParentalAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRI
AP...F.D.I.AIGTKRY.SNSGGEREIQ.TMLELL.QLDG.D.R.D.KVI.AT...ETLD.ALIRPG.I
RetrocopyAPTTMFTDGIHAIGTKRYKSNSGGEREIQQTMLELLSQLDGVDLRDDMKVIAATDQTETLDMALIRPGCI
ParentalDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDD-LSGADIKAICTEAGLMALRERRMKVTN
.RK.EFP.PD.KTKK.IFQIHTSR.TLADD.T.DDLIM.KD..L.GA.IKAICTE.G.MA.RE.RMKVTN
RetrocopyNRKPEFPQPDKKTKKYIFQIHTSRVTLADDGTPDDLIMTKDT<LLGANIKAICTETGVMAFRECRMKVTN
ParentalEDFKKSKENVLYKKQEGTPEGLYL
EDFKKSKEN.LYKKQEG.PEGL.L
RetrocopyEDFKKSKENALYKKQEGIPEGLFL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Mustela putorius furo was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_mputfur_1602 retrocopy.

TSS - click to see more details

Mustela putorius furo was not studied using FANTOM5 data.

Lab - click to see more details

retro_mputfur_1602 was not experimentally validated.

Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 17 parental genes, and 48 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000018394 retrocopies
retro_amel_1536, retro_amel_1886, retro_amel_405, retro_amel_962,
Canis familiaris ENSCAFG000000175102 retrocopies
retro_cfam_1238, retro_cfam_1562,
Choloepus hoffmanni ENSCHOG000000135951 retrocopy
retro_chof_1954,
Dasypus novemcinctus ENSDNOG000000064581 retrocopy
retro_dnov_2162,
Equus caballus ENSECAG000000036011 retrocopy
retro_ecab_355,
Echinops telfairi ENSETEG000000026611 retrocopy
retro_etel_580,
Felis catus ENSFCAG000000113108 retrocopies
retro_fcat_1444, retro_fcat_1559, retro_fcat_2015, retro_fcat_344, retro_fcat_614, retro_fcat_691, retro_fcat_713, retro_fcat_924,
Macropus eugenii ENSMEUG000000015261 retrocopy
retro_meug_623,
Myotis lucifugus ENSMLUG000000074712 retrocopies
retro_mluc_2490, retro_mluc_508,
Macaca mulatta ENSMMUG000000229901 retrocopy
retro_mmul_255,
Mustela putorius furoENSMPUG00000008150 4 retrocopies
retro_mputfur_1602 , retro_mputfur_409, retro_mputfur_654, retro_mputfur_815,
Mus musculus ENSMUSG000000211783 retrocopies
retro_mmus_1517, retro_mmus_1826, retro_mmus_812,
Oryctolagus cuniculus ENSOCUG000000062314 retrocopies
retro_ocun_1135, retro_ocun_1212, retro_ocun_1654, retro_ocun_411,
Otolemur garnettii ENSOGAG000000323432 retrocopies
retro_ogar_3014, retro_ogar_367,
Pongo abelii ENSPPYG000000259489 retrocopies
retro_pabe_1059, retro_pabe_153, retro_pabe_2379, retro_pabe_2408, retro_pabe_2737, retro_pabe_2832, retro_pabe_3099, retro_pabe_825, retro_pabe_907,
Pteropus vampyrus ENSPVAG000000100203 retrocopies
retro_pvam_1190, retro_pvam_350, retro_pvam_500,
Tursiops truncatus ENSTTRG000000135821 retrocopy
retro_ttru_239,


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