Parental gene:

Psmc1, ENSMUSG00000021178

Aliases:Psmc1, AI325227, P26s4, S4
Description:protease (prosome, macropain) 26S subunit, ATPase 1 [Source:MGI Symbol;Acc:MGI:106054]
Organism:Mouse (Mus musculus)
Coordinates:12:100110185..100123364(+)


>ENSMUSG00000021178
ATGGGTCAAAGCCAGAGTGGTGGCCATGGTCCTGGGGGTGGCAAGAAGGATGACAAGGACAAGAAAAAGAAATACGAACC
TCCTGTCCCAACTAGAGTGGGGAAAAAGAAGAAGAAAACAAAGGGACCAGATGCTGCCAGCAAACTGCCACTGGTAACAC
CTCACACCCAGTGCCGCCTGAAATTACTGAAGCTAGAGAGAATAAAAGACTATCTTCTCATGGAGGAGGAATTCATTAGA
AACCAGGAACAGATGAAACCATTAGAAGAAAAGCAAGAGGAGGAAAGATCAAAAGTGGATGATCTCAGGGGGACCCCCAT
GTCTGTAGGAACCTTGGAAGAGATCATTGATGATAATCACGCCATTGTGTCCACATCTGTGGGCTCAGAACACTACGTCA
GCATCCTGTCGTTTGTAGACAAGGATCTGCTGGAACCAGGCTGCTCCGTCCTGCTCAACCACAAGGTGCATGCTGTGATA
GGGGTGCTAATGGATGACACGGATCCCCTGGTCACAGTGATGAAGGTGGAAAAGGCCCCCCAGGAGACCTACGCAGATAT
TGGGGGACTGGACAACCAGATCCAAGAAATTAAGGAGTCTGTGGAGCTCCCGCTTACCCATCCTGAGTATTACGAGGAGA
TGGGGATAAAGCCCCCTAAGGGGGTCATTCTCTACGGTCCGCCAGGAACAGGTAAAACTCTATTGGCCAAAGCAGTAGCG
AACCAGACTTCAGCCACTTTCTTGCGAGTGGTTGGCTCAGAGCTTATCCAGAAGTACCTAGGTGACGGGCCCAAACTTGT
CCGGGAGCTCTTCCGGGTCGCTGAGGAGCATGCGCCGTCCATCGTGTTCATTGATGAGATCGACGCCATTGGGACCAAAA
GATATGATTCAAATTCTGGAGGTGAGAGAGAAATTCAGCGAACAATGTTGGAACTGTTGAACCAGTTGGATGGATTTGAT
TCGAGGGGAGATGTAAAAGTTATCATGGCCACAAACCGAATAGAAACTTTGGATCCAGCACTTATCAGGCCAGGCCGCAT
TGACAGAAAGATCGAGTTCCCCCTGCCGGATGAGAAGACCAAGAAGCGTATCTTCCAGATTCACACCAGCAGGATGACAC
TGGCTGATGATGTAACCTTGGATGACTTGATCATGGCAAAGGATGACCTCTCTGGGGCCGACATCAAGGCAATCTGTACA
GAAGCTGGCTTGATGGCCTTGCGGGAACGCAGAATGAAAGTAACAAATGAAGACTTCAAAAAATCTAAAGAGAATGTTCT
TTATAAAAAACAAGAAGGCACCCCTGAGGGGCTCTATCTCTAG

Library Parental gene expression (RPM)
SRP007412_brain 96 .00 RPM
SRP007412_cerebellum 109 .38 RPM
SRP007412_heart 87 .29 RPM
SRP007412_kidney 101 .66 RPM
SRP007412_liver 96 .81 RPM
SRP007412_testis 60 .28 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001839 ortholog_one2one 4 retrogenes
retro_amel_1536, retro_amel_1886, retro_amel_405, retro_amel_962,
Canis familiaris ENSCAFG00000017510 ortholog_one2many 2 retrogenes
retro_cfam_1238, retro_cfam_1562,
Choloepus hoffmanni ENSCHOG00000013595 ortholog_one2one 1 retrogene
retro_chof_1954,
Dasypus novemcinctus ENSDNOG00000006458 ortholog_one2one 1 retrogene
retro_dnov_2162,
Equus caballus ENSECAG00000003601 ortholog_one2one 1 retrogene
retro_ecab_355,
Echinops telfairi ENSETEG00000002661 ortholog_one2one 1 retrogene
retro_etel_580,
Felis catus ENSFCAG00000011310 ortholog_one2one 8 retrogenes
retro_fcat_1444, retro_fcat_1559, retro_fcat_2015, retro_fcat_344, retro_fcat_614, retro_fcat_691, retro_fcat_713, retro_fcat_924,
Macropus eugenii ENSMEUG00000001526 ortholog_one2one 1 retrogene
retro_meug_623,
Myotis lucifugus ENSMLUG00000007471 ortholog_one2one 2 retrogenes
retro_mluc_2490, retro_mluc_508,
Macaca mulatta ENSMMUG00000022990 possible_ortholog 1 retrogene
retro_mmul_255,
Mustela putorius furo ENSMPUG00000008150 ortholog_one2one 4 retrogenes
retro_mputfur_1602, retro_mputfur_409, retro_mputfur_654, retro_mputfur_815,
Oryctolagus cuniculus ENSOCUG00000006231 ortholog_one2one 4 retrogenes
retro_ocun_1135, retro_ocun_1212, retro_ocun_1654, retro_ocun_411,
Otolemur garnettii ENSOGAG00000032343 possible_ortholog 2 retrogenes
retro_ogar_3014, retro_ogar_367,
Pongo abelii ENSPPYG00000025948 possible_ortholog 9 retrogenes
retro_pabe_1059, retro_pabe_153, retro_pabe_2379, retro_pabe_2408, retro_pabe_2737, retro_pabe_2832, retro_pabe_3099, retro_pabe_825, retro_pabe_907,
Pteropus vampyrus ENSPVAG00000010020 ortholog_one2one 3 retrogenes
retro_pvam_1190, retro_pvam_350, retro_pvam_500,
Tursiops truncatus ENSTTRG00000013582 ortholog_one2one 1 retrogene
retro_ttru_239,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_812 60.84 68.41
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2. retro_mmus_1517 95.61 51.82
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3. retro_mmus_1826 92.99 100.00
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Download FASTA sequences of all ENSMUSG00000021178 retrocopies