RetrogeneDB ID: | retro_amel_1536 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193569.1:503938..504747(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMC1 | ||
Ensembl ID: | ENSAMEG00000001839 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.68 % |
Parental protein coverage: | 61.59 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | KQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVI |
.Q.E..SKV.DLR.T.MSV.T.EEI.DDN..IVS.SVGSEH...ILSFVDKDL.EPGCS.LLNHKVHAVI | |
Retrocopy | EQQED*SKVNDLR-TSMSVRTIEEITDDNQTIVSKSVGSEHNICILSFVDKDLVEPGCSILLNHKVHAVI |
Parental | GVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGT |
.VLMDD.DPLVTVMKVEK.PQETYAD.G.LD.QIQEIKESVELPLTHP.YYEEM.IKPPKG.ILY.PPGT | |
Retrocopy | QVLMDDMDPLVTVMKVEKDPQETYADTGKLDSQIQEIKESVELPLTHPQYYEEMSIKPPKGDILYDPPGT |
Parental | GKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSG |
GKTLLAKAVANQTSATFLRV.GSELI.KYLG..PKL..ELF...EEHA.SI.FIDEIDAIGTKR.DS.S. | |
Retrocopy | GKTLLAKAVANQTSATFLRVAGSELIEKYLGNKPKLI*ELFPIVEEHASSITFIDEIDAIGTKR*DSSSS |
Parental | GEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEF-PLPDEKTK |
GEREIQ..MLELL.QL.GFDSRGD.KVIMATN..ET.DP.L.RP...DRKIEF.PL.DE.TK | |
Retrocopy | GEREIQ*MMLELLSQLEGFDSRGDMKVIMATNQTETSDPTLLRPDLTDRKIEF<PLLDENTK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001839 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000017510 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000013595 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000006458 | 1 retrocopy | |
Equus caballus | ENSECAG00000003601 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000002661 | 1 retrocopy | |
Felis catus | ENSFCAG00000011310 | 8 retrocopies | |
Macropus eugenii | ENSMEUG00000001526 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007471 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000022990 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000008150 | 4 retrocopies | |
Mus musculus | ENSMUSG00000021178 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006231 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000032343 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000025948 | 9 retrocopies | |
Pteropus vampyrus | ENSPVAG00000010020 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000013582 | 1 retrocopy |