Parental gene:

SMEK2, ENSBTAG00000000545

Aliases:None
Description:serine/threonine-protein phosphatase 4 regulatory subunit 3B [Source:RefSeq peptide;Acc:NP_001178079]
Organism:Cow (Bos taurus)
Coordinates:11:38099215..38150591(-)


>ENSBTAG00000000545
ATGTCGGATACGCGGCGGCGAGTGAAGGTCTATACCCTGAACGAAGTTCGGCAATGGGACGACCGAGGCACCGGGCACGT
CTCCTCTATCTATGTGGAGGAGCTCAAGGGAATGTCGCTGCTGGTTCGGGCAGAGTCCGACGGATCACTACTCTTGGAAT
CAAAGATAAATCCAAACACTGCATATCAAAAACAGCAGGATACATTAATTGTTTGGTCAGAAGCTGAAAACTATGATCTG
GCACTAAGTTTCCAGGAAAAAGCTGGCTGTGATGAGATCTGGGAAAAAATTTGTCAGGTTCAAGGTAAGGATCCATCAGT
GGAAGTCACACAGGACCTTATTGATGAATCAGAAGAAGAACGATTTGAGGAAATGCCTGAAACCAGTCATCTGATTGACC
TACCCACATGTGAACTCAATAAACTTGAAGAGATTGCTGACTTAGTTACCTCAGTTCTCTCCTCACCTATCCGTAGGGAA
AAGCTGGCTCTGGCCTTGGAAAATGAAGGCTATATTAAAAAACTACTGCAGCTATTCCAAGCTTGTGAGAACCTGGAAAA
CACTGAAGGCTTACACCATTTGTATGAAATTATTAGAGGAATCTTATTCCTAAATAAGGCAACTCTGTTTGAGGTTATGT
TTTCTGATGAGTGTATCATGGATGTCGTGGGATGTCTTGAATATGACCCTGCTTTGGCTCAGCCAAAAAGGCACCGAGAA
TTCTTGACCAAAACTGCAAAGTTTAAGGAAGTTATACCAATAACAGACTCTGAACTAAGGCAAAAAATACATCAGACTTA
CAGGGTACAATACATTCAGGACATCATTTTGCCTACACCATCAGTTTTTGAAGAGAATTTTCTTTCTACTCTTACATCTT
TTATTTTCTTCAACAAAGTTGAAATAGTCAGCATGTTGCAGGAAGATGAGAAATTTTTGTCTGAAGTTTTTGCACAATTA
ACAGATGAGGCCACGGATGATGATAAACGACGTGAATTGGTTAATTTTTTCAAGGAATTTTGTGCGTTTTCTCAGACATT
ACAACCTCAAAACAGAGACGCATTTTTCAAAACTCTGGCAAAGTTGGGGATTCTTCCTGCTCTTGAAATCGTAATGGGCA
TGGACGATTTGCAAGTCAGGTCAGCTGCAACAGATATATTTTCTTATCTAGTAGAGTTTAGTCCATCCATGGTCCGAGAA
TTTGTAATGCAAGAAGCCCAACAGAGTGATGACGATATCCTTCTTATTAATGTAGTAATTGAACAAATGATCTGTGACAC
TGATCCTGAGCTAGGAGGTGCTGTTCAGTTAATGGGACTTCTTCGTACTCTAATTGATCCAGAGAACATGCTGGCTACAA
CTAATAAAACTGAAAAAAGTGAATTTCTAAATTTCTTCTACAACCATTGTATGCATGTCCTCACAGCACCACTTTTGACC
AATACTTCAGAAGACAGACGTGAAAAGGATAATGTAGTTGGATCTAACAAAAGCAGCACGATTTGCCCTGGTGCTCTCCG
TTTTATGAGGCGAATAATTGGCCTTAAAGATGAATTTTACAATCGTTACATCACGAAGGGAAATCTTTTTGAGCCAGTTG
TAAATGCTCTTCTGGATAATGGAACTCGGTACAATCTATTGAATTCAGCTGTTATTGAGTTATTTGAATTTATAAGAGTG
GAAGATATCAAGTCTCTTACTGCACATATAGTTGAAAACTTTTACAAAGCACTTGAATCGATTGAATATGTTCAGACATT
CAAAGGATTGAAGACTAAATATGAGCAAGAAAAAGACAGACAAAATCAGAAACTGAACAGTGTACCATCTATATTACGTA
GTAACAGATTTCGCAGAGATGCAAAGGCGTTGGAAGAGGATGAAGAAATGTGGTTTAATGAAGATGATGAGGAGGAAGGA
AAAACAGTTGTTGCACCAGTGGAAAAATCTAAGGCAGAAGATGATTTTCCAGATAGTTATGAAAAATTCATGGAGACTAA
AAAAGCAAAGGAAAGTGAAGATAAGGAAAACCTTCCAAAAAGGACATCTTCTGGTGGCTTCAAATTTACTTTCTCCCACT
CCACCAGTGCTGCTAATGGAGCAAACAGTACAAACAGCAAATCTGTAGTGGCTCAGACACCACCAGCAAGTTCTAATGGA
TCCTCTTCCAAAACTACAAACTTGGCCACATCCGTAACAGCCACCAAGGGAAGTTTGGTTGGTTTAGTGGATTATCCAGA
TGATGAAGAGGAAGAGGAAGAGGAAGAAACATCTCCCAGGAAAAGACCTCGTCTTGGCTCATAA

Library Parental gene expression (RPM)
ERP005899_liver 31 .58 RPM
ERP005899_muscle 109 .75 RPM
SRP017611_brain 51 .39 RPM
SRP017611_kidney 86 .95 RPM
SRP017611_liver 63 .88 RPM
SRP030211_testis 84 .48 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003843 ortholog_one2one 1 retrogene
retro_amel_48,
Canis familiaris ENSCAFG00000002860 ortholog_one2one 1 retrogene
retro_cfam_226,
Equus caballus ENSECAG00000013819 ortholog_one2one 1 retrogene
retro_ecab_23,
Echinops telfairi ENSETEG00000002420 ortholog_one2many 1 retrogene
retro_etel_1699,
Felis catus ENSFCAG00000026457 ortholog_one2one 1 retrogene
retro_fcat_13,
Homo sapiens ENSG00000138041 ortholog_one2one 1 retrogene
retro_hsap_4799,
Loxodonta africana ENSLAFG00000017825 ortholog_one2many 1 retrogene
retro_lafr_791,
Myotis lucifugus ENSMLUG00000003875 ortholog_one2many 1 retrogene
retro_mluc_994,
Macaca mulatta ENSMMUG00000007001 ortholog_one2one 1 retrogene
retro_mmul_238,
Mustela putorius furo ENSMPUG00000002435 ortholog_one2one 1 retrogene
retro_mputfur_92,
Nomascus leucogenys ENSNLEG00000009338 ortholog_one2one 1 retrogene
retro_nleu_1112,
Oryctolagus cuniculus ENSOCUG00000006880 ortholog_one2one 1 retrogene
retro_ocun_9,
Otolemur garnettii ENSOGAG00000009837 ortholog_one2one 1 retrogene
retro_ogar_140,
Pan troglodytes ENSPTRG00000011933 ortholog_one2one 1 retrogene
retro_ptro_3191,
Sus scrofa ENSSSCG00000008398 ortholog_one2one 1 retrogene
retro_sscr_1187,
Ictidomys tridecemlineatus ENSSTOG00000006276 ortholog_one2one 1 retrogene
retro_itri_63,
Tursiops truncatus ENSTTRG00000000027 ortholog_one2one 1 retrogene
retro_ttru_1397,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_232 62.75 65.45
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Download FASTA sequences of all ENSBTAG00000000545 retrocopies