Parental gene:

SMEK2, ENSG00000138041

Aliases:SMEK2, FLFL2, PP4R3B, PSY2, smk1
Description:SMEK homolog 2, suppressor of mek1 (Dictyostelium) [Source:HGNC Symbol;Acc:29267]
Organism:Human (Homo sapiens)
Coordinates:2:55774427..55846015(-)


>ENSG00000138041
ATGTCGGATACGCGGCGGCGAGTGAAGGTCTATACCCTGAACGAAGACCGGCAATGGGACGACCGAGGCACCGGGCACGT
CTCCTCCACTTACGTGGAGGAGCTCAAGGGGATGTCGCTGCTGGTTCGGGCAGAGTCCGACGGATCACTACTCTTGGAAT
CAAAGATAAATCCAAATACTGCATATCAGAAACAACAGGATACATTAATTGTTTGGTCAGAAGCAGAGAACTATGATTTG
GCTCTGAGTTTTCAGGAGAAAGCTGGCTGTGATGAGATCTGGGAAAAAATTTGTCAGGTTCAAGGTAAAGACCCATCAGT
GGAAGTCACACAGGACCTCATTGATGAATCTGAAGAAGAACGATTTGAAGAAATGCCTGAAACTAGTCATCTGATTGACC
TGCCCACATGTGAACTCAATAAACTTGAAGAGATTGCTGACTTAGTTACCTCAGTGCTCTCCTCACCTATCCGTAGGGAA
AAGCTGGCTCTCGCCTTGGAAAATGAAGGCTATATTAAAAAACTATTGCAGCTGTTCCAAGCTTGCGAGAACCTAGAAAA
CACTGAAGGCTTACACCATTTGTATGAAATTATTAGAGGAATCTTATTCCTAAATAAGGCAACTCTTTTTGAGGTAATGT
TTTCTGATGAGTGTATCATGGATGTCGTGGGATGCCTTGAATATGACCCTGCTTTGGCTCAGCCAAAAAGACATAGAGAA
TTCTTGACCAAAACTGCAAAGTTCAAGGAAGTTATACCAATAACAGACTCTGAACTAAGGCAAAAAATACATCAGACTTA
CAGGGTACAGTACATTCAGGACATCATTTTGCCCACACCATCTGTTTTTGAAGAGAATTTTCTTTCTACTCTTACGTCTT
TTATTTTCTTCAACAAAGTTGAGATAGTCAGCATGTTGCAGGAAGATGAGAAGTTTTTGTCTGAAGTTTTTGCACAATTA
ACAGATGAGGCTACAGATGATGATAAACGGCGTGAATTGGTTAATTTTTTCAAGGAGTTTTGTGCATTTTCTCAGACATT
ACAACCTCAAAACAGGGATGCATTTTTCAAAACATTGGCAAAATTGGGAATTCTTCCTGCTCTTGAAATTGTAATGGGCA
TGGATGATTTGCAAGTCAGATCAGCTGCTACAGATATATTTTCTTATCTAGTAGAATTTAGTCCATCTATGGTCCGAGAG
TTTGTAATGCAAGAAGCTCAGCAGAGTGATGACGATATTCTTCTTATTAATGTGGTAATTGAACAAATGATCTGTGATAC
TGATCCTGAGCTAGGAGGCGCTGTTCAGTTAATGGGACTTCTTCGTACTCTAATTGATCCAGAGAACATGCTGGCTACAA
CTAATAAAACCGAAAAAAGTGAATTTCTAAATTTTTTCTACAACCATTGTATGCATGTTCTCACAGCACCACTTTTGACC
AATACTTCAGAAGACAAATGTGAAAAGGATTTTTTTTTAAAACATTACAGATATAGTTGGAGTTTCATATGTACCCCTTC
ACATTCCCATTCCCATTCTACCCCCTCTTCCTCCATCTCTCAAGATAATATAGTTGGATCAAACAAAAACAACACAATTT
GTCCCGATAATTATCAAACAGCACAGCTACTTGCCTTAATTTTAGAGTTACTCACATTTTGTGTGGAACATCACACATAT
CACATAAAAAACTATATTATGAACAAGGACTTGCTAAGAAGAGTCTTGGTCTTGATGAATTCAAAGCACACTTTTCTGGC
CTTGTGTGCCCTTCGCTTTATGAGGCGGATAATTGGACTTAAAGATGAATTTTATAATCGTTACATCACCAAGGGAAATC
TTTTTGAGCCAGTTATAAATGCACTTCTGGATAATGGAACTCGGTATAATCTGTTGAATTCAGCTGTTATTGAGTTGTTT
GAATTTATAAGAGTGGAAGATATCAAGTCTCTTACTGCCCATATAGTTGAAAACTTTTATAAAGCACTTGAATCGATTGA
ATATGTTCAGACATTCAAAGGATTGAAGACTAAATATGAGCAAGAAAAAGACAGACAAAATCAGAAACTGAACAGTGTAC
CATCTATATTGCGTAGTAACAGATTTCGCAGAGATGCAAAAGCCTTGGAAGAGGATGAAGAAATGTGGTTTAATGAAGAT
GAAGAAGAGGAAGGAAAAGCAGTTGTGGCACCAGTGGAAAAACCTAAGCCAGAAGATGATTTTCCAGATAATTATGAAAA
GTTTATGGAGACTAAAAAAGCAAAAGAAAGTGAAGACAAGGAAAACCTTCCCAAAAGGACATCTCCTGGTGGCTTCAAAT
TTACTTTCTCCCACTCTGCCAGTGCTGCTAATGGAACAAACAGTAAATCTGTAGTGGCTCAGATACCACCAGCAACTTCT
AATGGATCCTCTTCCAAAACCACAAACTTGCCTACGTCAGTAACAGCCACCAAGGGAAGTTTGGTTGGCTTAGTGGATTA
TCCAGATGATGAAGAGGAAGATGAAGAAGAAGAATCGTCCCCCAGGAAAAGACCTCGTCTTGGCTCATAA

Library Parental gene expression (RPM)
bodymap2_liver 59 .97 RPM
bodymap2_lung 103 .64 RPM
bodymap2_breast 151 .91 RPM
bodymap2_adipose 119 .57 RPM
bodymap2_adrenal 101 .53 RPM
bodymap2_skeletal_muscle 43 .89 RPM
bodymap2_thyroid 114 .51 RPM
bodymap2_prostate 144 .26 RPM
bodymap2_colon 182 .94 RPM
bodymap2_testis 145 .73 RPM
bodymap2_brain 69 .24 RPM
bodymap2_heart 45 .47 RPM
bodymap2_white_blood_cells 222 .28 RPM
bodymap2_lymph_node 119 .22 RPM
bodymap2_ovary 162 .14 RPM
bodymap2_kidney 153 .99 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003843 ortholog_one2one 1 retrogene
retro_amel_48,
Bos taurus ENSBTAG00000000545 ortholog_one2one 1 retrogene
retro_btau_232,
Canis familiaris ENSCAFG00000002860 ortholog_one2one 1 retrogene
retro_cfam_226,
Equus caballus ENSECAG00000013819 ortholog_one2one 1 retrogene
retro_ecab_23,
Echinops telfairi ENSETEG00000002420 ortholog_one2one 1 retrogene
retro_etel_1699,
Felis catus ENSFCAG00000026457 ortholog_one2one 1 retrogene
retro_fcat_13,
Loxodonta africana ENSLAFG00000017825 ortholog_one2one 1 retrogene
retro_lafr_791,
Myotis lucifugus ENSMLUG00000003875 ortholog_one2many 1 retrogene
retro_mluc_994,
Macaca mulatta ENSMMUG00000007001 ortholog_one2one 1 retrogene
retro_mmul_238,
Mustela putorius furo ENSMPUG00000002435 ortholog_one2one 1 retrogene
retro_mputfur_92,
Nomascus leucogenys ENSNLEG00000009338 ortholog_one2one 1 retrogene
retro_nleu_1112,
Oryctolagus cuniculus ENSOCUG00000006880 ortholog_one2one 1 retrogene
retro_ocun_9,
Otolemur garnettii ENSOGAG00000009837 ortholog_one2one 1 retrogene
retro_ogar_140,
Pan troglodytes ENSPTRG00000011933 ortholog_one2one 1 retrogene
retro_ptro_3191,
Sus scrofa ENSSSCG00000008398 ortholog_one2one 1 retrogene
retro_sscr_1187,
Ictidomys tridecemlineatus ENSSTOG00000006276 ortholog_one2one 1 retrogene
retro_itri_63,
Tursiops truncatus ENSTTRG00000000027 ortholog_one2one 1 retrogene
retro_ttru_1397,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_4799 66.96 84.21
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Download FASTA sequences of all ENSG00000138041 retrocopies