Parental gene:

SNRPF, ENSBTAG00000016271

Aliases:SNRPF, Sm-F, SmF, snRNP-F
Description:Small nuclear ribonucleoprotein F [Source:UniProtKB/Swiss-Prot;Acc:Q3T0Z8]
Organism:Cow (Bos taurus)
Coordinates:5:60556050..60564297(+)


>ENSBTAG00000016271
ATGAGTTTGCCCCTCAACCCCAAACCTTTCCTCAACGGATTAACAGGAAAGCCAGTAATGGTGAAGCTTAAATGGGGAAT
GGAGTACAAGGGCTACCTGGTGTCTGTAGATGGCTATATGAACATGCAGCTTGCAAACACAGAAGAATACATAGATGGAG
CATTGTCTGGACATCTGGGTGAAGTTTTAATAAGGTGTAATAATGTCCTTTATATCAGGGGTGTTGAAGAAGAAGAAGAA
GATGGGGAAATGAGAGAATAG

Library Parental gene expression (RPM)
ERP005899_liver 19 .18 RPM
ERP005899_muscle 26 .98 RPM
SRP017611_brain 7 .67 RPM
SRP017611_kidney 15 .35 RPM
SRP017611_liver 8 .91 RPM
SRP030211_testis 45 .80 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002166 possible_ortholog 3 retrogenes
retro_amel_1239, retro_amel_42, retro_amel_883,
Bos taurus ENSBTAG00000014060 within_species_paralog 1 retrogene
retro_btau_861,
Equus caballus ENSECAG00000019817 ortholog_one2one 1 retrogene
retro_ecab_154,
Felis catus ENSFCAG00000029966 possible_ortholog 4 retrogenes
retro_fcat_280, retro_fcat_66, retro_fcat_77, retro_fcat_861,
Homo sapiens ENSG00000139343 ortholog_one2one 3 retrogenes
retro_hsap_125, retro_hsap_2487, retro_hsap_2645,
Gorilla gorilla ENSGGOG00000001127 ortholog_one2one 2 retrogenes
retro_ggor_1549, retro_ggor_225,
Macaca mulatta ENSMMUG00000009302 ortholog_one2one 4 retrogenes
retro_mmul_1521, retro_mmul_361, retro_mmul_550, retro_mmul_893,
Mustela putorius furo ENSMPUG00000007176 ortholog_one2one 3 retrogenes
retro_mputfur_1309, retro_mputfur_377, retro_mputfur_941,
Mus musculus ENSMUSG00000020018 ortholog_one2one 4 retrogenes
retro_mmus_1060, retro_mmus_1197, retro_mmus_2537, retro_mmus_3210,
Nomascus leucogenys ENSNLEG00000005835 ortholog_one2one 3 retrogenes
retro_nleu_2259, retro_nleu_274, retro_nleu_651,
Pongo abelii ENSPPYG00000004847 ortholog_one2one 2 retrogenes
retro_pabe_381, retro_pabe_489,
Pteropus vampyrus ENSPVAG00000009036 ortholog_one2one 1 retrogene
retro_pvam_1170,
Rattus norvegicus ENSRNOG00000005556 ortholog_one2one 4 retrogenes
retro_rnor_1822, retro_rnor_1849, retro_rnor_2926, retro_rnor_444,
Sus scrofa ENSSSCG00000000895 ortholog_one2one 1 retrogene
retro_sscr_958,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_765 93.59 90.70
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Download FASTA sequences of all ENSBTAG00000016271 retrocopies