Parental gene:

PPID, ENSBTAG00000016680

Aliases:PPID, CYP-40
Description:Peptidyl-prolyl cis-trans isomerase D [Source:UniProtKB/Swiss-Prot;Acc:P26882]
Organism:Cow (Bos taurus)
Coordinates:17:41249492..41262410(+)


>ENSBTAG00000016680
ATGTCGCATCCATCCCCCCAGGCTAAGCCTTCCAACCCCAGTAACCCTCGAGTTTTCTTCGACGTGGACATCGGAGGGGA
GCGAGTTGGTCGAATTGTCTTAGAATTGTTTGCAGATATTGTACCCAAAACTGCAGAAAATTTTCGTGCATTGTGTACAG
GAGAAAAAGGCATTGGACCCACCACTGGGAAACCTCTTCATTTCAAAGGATGTCCTTTCCATAGAATTATTAAGAAATTT
ATGATTCAGGGTGGAGACTTCTCAAATCAGAATGGGACAGGTGGAGAAAGCATTTATGGTGAAAAATTTGAAGATGAAAA
TTTCCATTATAAGCATGACAAGGAGGGATTGCTGAGCATGGCCAACGCCGGCAGCAACACCAACGGCTCCCAGTTCTTCA
TCACCACCGTTCCGACTCCGCATTTGGATGGGAAGCACGTAGTGTTTGGCCAAGTGATTAAAGGAATGGGTGTGGCAAAG
ATTCTGGAAAATGTGGAGGTGAAAGGTGAAAAACCTGCCAAATTGTGCGTTATTGCAGAATGTGGAGAACTGAAAGAAGG
GGATGATTGGGGAATATTCCCAAAGGATGGATCTGGTGACAGTCACCCAGATTTCCCCGAGGACGCAGATGTGGATTTAA
AAGATGTAGATAAAATTTTATTAATATCAGAAGACTTAAAAAACATTGGAAATACGTTTTTCAAATCCCAGAACTGGGAG
ATGGCCATTAAAAAATACACAAAAGTTTTAAGGTATGTGGAAGGTTCCAGGGCTGCTGCTGAGGACGCAGATGGAGCAAA
GCTGCAGCCTGTCGCTTTGAGCTGCGTGCTGAATATTGGCGCCTGCAAACTGAAGATGTCTGATTGGCAGGGCGCAGTCG
ATAGCTGTTTGGAGGCCCTTGAAATAGACCCATCAAATACCAAAGCACTGTACCGTAGAGCCCAGGGATGGCAAGGATTA
AAAGAATATGATCAAGCATTGGCTGATCTTAAGAAAGCTCAGGAAATAGCACCAGAAGATAAAGCGATCCAGGCAGAATT
GCTGAAAGTCAAGCAAAAGATAAAGGCACAGAAAGATAAAGAGAAGGCAGCTTATGCAAAAATGTTTGCCTGA

Library Parental gene expression (RPM)
ERP005899_liver 22 .57 RPM
ERP005899_muscle 55 .22 RPM
SRP017611_brain 38 .46 RPM
SRP017611_kidney 39 .18 RPM
SRP017611_liver 20 .46 RPM
SRP030211_testis 49 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000012069 ortholog_one2one 1 retrogene
retro_chof_1533,
Callithrix jacchus ENSCJAG00000001437 ortholog_one2one 2 retrogenes
retro_cjac_2321, retro_cjac_4162,
Echinops telfairi ENSETEG00000012655 possible_ortholog 2 retrogenes
retro_etel_10, retro_etel_633,
Felis catus ENSFCAG00000028926 ortholog_one2one 2 retrogenes
retro_fcat_494, retro_fcat_559,
Myotis lucifugus ENSMLUG00000009317 ortholog_one2one 1 retrogene
retro_mluc_1667,
Macaca mulatta ENSMMUG00000017768 ortholog_one2many 2 retrogenes
retro_mmul_281, retro_mmul_348,
Mustela putorius furo ENSMPUG00000018108 ortholog_one2one 1 retrogene
retro_mputfur_1415,
Oryctolagus cuniculus ENSOCUG00000006602 ortholog_one2one 1 retrogene
retro_ocun_1625,
Otolemur garnettii ENSOGAG00000003317 ortholog_one2one 2 retrogenes
retro_ogar_2355, retro_ogar_2680,
Pongo abelii ENSPPYG00000015159 ortholog_one2one 1 retrogene
retro_pabe_3594,
Rattus norvegicus ENSRNOG00000027408 possible_ortholog 1 retrogene
retro_rnor_188,
Ictidomys tridecemlineatus ENSSTOG00000001552 ortholog_one2one 1 retrogene
retro_itri_1422,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_1672 83.16 100.00
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Download FASTA sequences of all ENSBTAG00000016680 retrocopies