Parental gene: | PPID, ENSCJAG00000001437 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 3:33441484..33456068(+) |
>ENSCJAG00000001437
ATGTCGCACCCGTCCCCCCAAGCCAAGCCCTCCAACCCCAGTAACCCTCGAGTCTTCTTTGACGTGGACATCGGAGGGGA
GCGAGTGGGTCGAATAGTCTTAGAATTGTTTGCAGATATTGTACCCAAAACTGCGGAAAATTTTCGTGCACTGTGTACAG
GAGAAAAAGGCATTGGACCCACGACTGGAAAACCTCTCCATTTCAAAGGATGCCCTTTTCATCGAATTATTAAGAAATTT
ATGATCCAGGGTGGAGACTTCTCAAATCAGAATGGGACGGGTGGAGAAAGTATTTATGGTGAAAAATTTGAAGATGAAAA
TTTCCATTATAAGCATGATCGGGAGGGTTTACTGAGCATGGCAAATGCAGGCCGCAACACAAATGGTTCTCAGTTTTTTA
TCACAACGGTTCCAACTCCTCATTTGGATGGGAAACATGTGGTGTTTGGCCAAGTAATTAAAGGAATAGGAGTGGCAAGG
ATATTGGAAAATGTAGAAGTGAAAGGTGAAAAACCTGCCAAATTGTGCATTATTGCAGAATGTGGAGAATTGAAGGAAGG
AGATGATTGGGGAATATTCCCAAAAGATGGCTCTGGCGACAGTCATCCAGATTTCCCTGAGGATGCGGATATAGATTTAA
AAGACGTAGATAAAATTTTATTAATAACAGAAGACTTAAAAAACATTGGAAATACTTTTTTCAAATCCCAGAACTGGGAG
ATGGCCATTAAAAAATATGCAAAAGTTTTAAGATATGTTGACAGTTCTAAGGCTGTTATCGAGACAGCAGATAGAGCCAA
GCTGCAACCTATAGCTTTAAGCTGTGTACTGAATATTGGTGCTTGTAAACTGAAGATGTCAAATTGGCAGGAAGCAATTG
ACAGTTGTTTGGAGGCTCTTGAAATAGACCCATCAAATACCAAAGCATTGTACCGAAGAGCTCAAGGATGGCAAGGATTA
AAAGAATATGATCAAGCATTGGCTGATCTTAAAAAAGCTCAGGAGATAGCACCAGAAGATAAAGCTATCCAGGCAGAATT
GCTGAAAGTCAAACAAAAGATAAAGGCACAGAAAGATAAAGAGAAGGCAGTATATGCAAAAATGTTTGCTTAG
ATGTCGCACCCGTCCCCCCAAGCCAAGCCCTCCAACCCCAGTAACCCTCGAGTCTTCTTTGACGTGGACATCGGAGGGGA
GCGAGTGGGTCGAATAGTCTTAGAATTGTTTGCAGATATTGTACCCAAAACTGCGGAAAATTTTCGTGCACTGTGTACAG
GAGAAAAAGGCATTGGACCCACGACTGGAAAACCTCTCCATTTCAAAGGATGCCCTTTTCATCGAATTATTAAGAAATTT
ATGATCCAGGGTGGAGACTTCTCAAATCAGAATGGGACGGGTGGAGAAAGTATTTATGGTGAAAAATTTGAAGATGAAAA
TTTCCATTATAAGCATGATCGGGAGGGTTTACTGAGCATGGCAAATGCAGGCCGCAACACAAATGGTTCTCAGTTTTTTA
TCACAACGGTTCCAACTCCTCATTTGGATGGGAAACATGTGGTGTTTGGCCAAGTAATTAAAGGAATAGGAGTGGCAAGG
ATATTGGAAAATGTAGAAGTGAAAGGTGAAAAACCTGCCAAATTGTGCATTATTGCAGAATGTGGAGAATTGAAGGAAGG
AGATGATTGGGGAATATTCCCAAAAGATGGCTCTGGCGACAGTCATCCAGATTTCCCTGAGGATGCGGATATAGATTTAA
AAGACGTAGATAAAATTTTATTAATAACAGAAGACTTAAAAAACATTGGAAATACTTTTTTCAAATCCCAGAACTGGGAG
ATGGCCATTAAAAAATATGCAAAAGTTTTAAGATATGTTGACAGTTCTAAGGCTGTTATCGAGACAGCAGATAGAGCCAA
GCTGCAACCTATAGCTTTAAGCTGTGTACTGAATATTGGTGCTTGTAAACTGAAGATGTCAAATTGGCAGGAAGCAATTG
ACAGTTGTTTGGAGGCTCTTGAAATAGACCCATCAAATACCAAAGCATTGTACCGAAGAGCTCAAGGATGGCAAGGATTA
AAAGAATATGATCAAGCATTGGCTGATCTTAAAAAAGCTCAGGAGATAGCACCAGAAGATAAAGCTATCCAGGCAGAATT
GCTGAAAGTCAAACAAAAGATAAAGGCACAGAAAGATAAAGAGAAGGCAGTATATGCAAAAATGTTTGCTTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 29 .90 RPM |
| SRP051959_skeletal_muscle | 34 .70 RPM |
| SRP051959_lymph_node | 34 .95 RPM |
| SRP051959_lung | 23 .96 RPM |
| SRP051959_liver | 28 .79 RPM |
| SRP051959_kidney | 21 .92 RPM |
| SRP051959_heart | 20 .10 RPM |
| SRP051959_colon | 20 .06 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000016680 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000012069 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000012655 | possible_ortholog | 2 retrogenes | |
| Felis catus | ENSFCAG00000028926 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000009317 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000017768 | ortholog_one2many | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000018108 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000006602 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000003317 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000015159 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000027408 | possible_ortholog | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000001552 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_2321 | 89.50 | 53.51 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_4162 | 95.69 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000001437 retrocopies