RetrogeneDB ID: retro_mluc_1667

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429882:1338577..1339249(+)
• Located in intron of: ENSMLUG00000009434

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PPID
• Ensembl ID: ENSMLUG00000009317
• Aliases: None
• Description: None

Sequence

>retro_mluc_1667
AACATGGTATTTGGCCAAGTAATTAAAGGAATGAGTGTGGCAAGAATTCTGGAAAATGTAGAAGTGAAAGGTGATAAACC
TGCCAATTTGTGTGCTACTGCAGAATGCAGAGAATTGAAGGCAGGGGGTGATTGGGAAATATGCTCAAAAGATGGTTCTG
GTGGCAGTCATCCAGATTTCCTCAAGGATGTAGATATAGATTTAAAAGACATAGATAAAATATTATTAATAACAGAAGAC
TTAAGATATTGGAAATATTTTTTTTTCAAATCCCAGAACTGGGAAATGGCCATTAAAAAATATACATAGATGTTAAGATA
TGTGGAAGGTTCAAAGACTATTATTGAGAAAGCAGATAGGTCGAGGCAGCAACCTGTAGCTTTAAGCTGCATGCTGAATA
TTGGTGCTTGTAAACTGAAGATGTCAAATTGGCTCGGAACAATGGACAGTTGTTTGGAGGTTCTTGAAATAGAACCATCA
AATACCAAAGCACAGTACCATAGAGCTTAAGGATGGCAAGGATTGAGAGAATAGGACCAAGCACTGGCTGATCTTAAGAA
ACCTTAGGAGATAGCACCCGAAGATAAAGCTATCCAGGCAGAATTGCTGAAAATCAAACAGAAGATAAAGGCACAGAAAA
ATAAAGAGAGGGAAGCATATGTAAAAGCATTT

Alignment

ORF - retro_mluc_1667 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.11 %
• Parental protein coverage: 60.75 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  HVVFGQVIKGMGVARILENVEVEGEKPAKLCVIAECGELKEGDDWGICPKDGSGDSHPDFPEDADLDLKD
          ..VFGQVIKGM.VARILENVEV.G.KPA.LC..AEC.ELK.G.DW.IC.KDGSG.SHPDF..D.D.DLKD
Retrocopy NMVFGQVIKGMSVARILENVEVKGDKPANLCATAECRELKAGGDWEICSKDGSGGSHPDFLKDVDIDLKD

Parental  VDKILLITEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSKAVIEKADRVKLQPVALSCMLNIGACKLK
          .DKILLITEDL........KSQNWEMAIKKYT..LRYVEGSK..IEKADR...QPVALSCMLNIGACKLK
Retrocopy IDKILLITEDLRYWKXXXXKSQNWEMAIKKYT*MLRYVEGSKTIIEKADRSRQQPVALSCMLNIGACKLK

Parental  MSNWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALLKADLKKAQEIAPEDKAIQAELLKVKQK
          MSNW.G..DSCLE.LEI.PSNTKA.Y.RA.GWQGL.E.DQAL..ADLKK..EIAPEDKAIQAELLK.KQK
Retrocopy MSNWLGTMDSCLEVLEIEPSNTKAQYHRA*GWQGLRE*DQAL--ADLKKP*EIAPEDKAIQAELLKIKQK

Parental  IKAQKDKEKAAYAKMF
          IKAQK.KE..AY.K.F
Retrocopy IKAQKNKEREAYVKAF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1667 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 14 parental genes, and 19 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000016680	1 retrocopy	retro_btau_1672,
Choloepus hoffmanni	ENSCHOG00000012069	1 retrocopy	retro_chof_1533,
Callithrix jacchus	ENSCJAG00000001437	2 retrocopies	retro_cjac_2321, retro_cjac_4162,
Echinops telfairi	ENSETEG00000012655	2 retrocopies	retro_etel_10, retro_etel_633,
Felis catus	ENSFCAG00000028926	2 retrocopies	retro_fcat_494, retro_fcat_559,
Myotis lucifugus	ENSMLUG00000003789	1 retrocopy	retro_mluc_2374,
Myotis lucifugus	ENSMLUG00000009317	1 retrocopy	retro_mluc_1667 ,
Macaca mulatta	ENSMMUG00000017768	2 retrocopies	retro_mmul_281, retro_mmul_348,
Mustela putorius furo	ENSMPUG00000018108	1 retrocopy	retro_mputfur_1415,
Oryctolagus cuniculus	ENSOCUG00000006602	1 retrocopy	retro_ocun_1625,
Otolemur garnettii	ENSOGAG00000003317	2 retrocopies	retro_ogar_2355, retro_ogar_2680,
Pongo abelii	ENSPPYG00000015159	1 retrocopy	retro_pabe_3594,
Rattus norvegicus	ENSRNOG00000027408	1 retrocopy	retro_rnor_188,
Ictidomys tridecemlineatus	ENSSTOG00000001552	1 retrocopy	retro_itri_1422,