Parental gene:

BT.89449, ENSBTAG00000021680

Aliases:SKA2, FAM33A
Description:spindle and kinetochore-associated protein 2 [Source:RefSeq peptide;Acc:NP_001033668]
Organism:Cow (Bos taurus)
Coordinates:19:10322519..10354258(-)


>ENSBTAG00000021680
ATGGAGGCGGAGGTCGATAAGCTGGAACTGATGTTCCAGAAAGCTGACTCTGATCTGGACTACATTCAGTACAGGCTGGA
ATATGAAATCAAGACTAATTATCCTGATTCAGCAGGCAAGAAAAATCCAGTTACACTTTTAAAGGAATTGTCAGCAATAA
AGTCTCGATATCAAACTTTGCATGTTCGATTTAAACCAATTGCTGTGGAGCAGAAAGAGACTAAGAGCCGCATTTGTGCT
ACTTTCAATAAGACTATGACCTTGATACAAGAACTGCAAAAGGAAACAGACCTGGAGTTGTTACCACTGACTGAAGAAGA
GAAAACTGCAGCAGAGCAATTAAGAGCTCACATGTCAGACTTATGA

Library Parental gene expression (RPM)
SRP017611_brain 14 .30 RPM
SRP017611_kidney 11 .38 RPM
SRP017611_liver 2 .64 RPM
ERP005899_muscle 8 .39 RPM
ERP005899_liver 7 .21 RPM
SRP030211_testis 24 .66 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000029233 ortholog_one2one 1 retrogene
retro_cfam_766,
Cavia porcellus ENSCPOG00000006051 ortholog_one2one 1 retrogene
retro_cpor_542,
Dipodomys ordii ENSDORG00000010768 ortholog_one2one 2 retrogenes
retro_dord_103, retro_dord_281,
Equus caballus ENSECAG00000015007 ortholog_one2one 1 retrogene
retro_ecab_987,
Felis catus ENSFCAG00000022802 ortholog_one2one 1 retrogene
retro_fcat_1111,
Homo sapiens ENSG00000182628 ortholog_one2one 1 retrogene
retro_hsap_4214,
Loxodonta africana ENSLAFG00000003405 ortholog_one2one 1 retrogene
retro_lafr_1215,
Myotis lucifugus ENSMLUG00000010942 ortholog_one2many 1 retrogene
retro_mluc_83,
Monodelphis domestica ENSMODG00000014619 ortholog_one2one 1 retrogene
retro_mdom_347,
Mustela putorius furo ENSMPUG00000015241 ortholog_one2one 1 retrogene
retro_mputfur_1435,
Mus musculus ENSMUSG00000020492 ortholog_one2one 2 retrogenes
retro_mmus_370, retro_mmus_778,
Otolemur garnettii ENSOGAG00000026072 ortholog_one2one 4 retrogenes
retro_ogar_1882, retro_ogar_2937, retro_ogar_3032, retro_ogar_907,
Rattus norvegicus ENSRNOG00000025981 ortholog_one2many 3 retrogenes
retro_rnor_1606, retro_rnor_523, retro_rnor_733,
Sorex araneus ENSSARG00000011128 ortholog_one2one 2 retrogenes
retro_sara_60, retro_sara_662,
Ictidomys tridecemlineatus ENSSTOG00000024169 ortholog_one2one 4 retrogenes
retro_itri_1115, retro_itri_1275, retro_itri_1434, retro_itri_725,
Tarsius syrichta ENSTSYG00000006158 ortholog_one2one 3 retrogenes
retro_tsyr_1620, retro_tsyr_2034, retro_tsyr_748,
Tursiops truncatus ENSTTRG00000017196 ortholog_one2one 1 retrogene
retro_ttru_143,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_310 98.35 100.00
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2. retro_btau_945 94.21 100.00
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Download FASTA sequences of all ENSBTAG00000021680 retrocopies