Parental gene:

PSMB8, ENSCAFG00000000829

Aliases:PSMB8, ATP6V0D2
Description:Canis lupus familiaris proteasome (prosome, macropain) subunit, beta type, 8 (large multifunctional peptidase 7) (PSMB8), mRNA. [Source:RefSeq mRNA;Acc:NM_001048085]
Organism:Dog (Canis familiaris)
Coordinates:12:2419455..2422832(-)


>ENSCAFG00000000829
ATGGCGCTGCTGGAGGTGTGCGGAGCCCCCCGAGGGCTGCGGAAGGCTTGCGCTGTCCCCGCCTTGGGAAGCCAGCTGCG
CTCGGACCCCGGACACTACAGTTTCTCCCTCCGAGCTCCGGAGCTCGCCGTCCCCCGGGGAATGCAGCCCACTGAATTCT
TCCAGTCCCTTGGTGAGAATGGAGAAAAGAACATTCGGAAGGAGATGGTCCATGGCACCACCACACTGGCCTTCAAGTTC
CAGCATGGAGTGATTGTGGCGGTGGATTCTCGGGCTACTGCTGGGAATTATATTAGCTCCTCAAGGGTTAACAAGGTGAT
TGAGATTAACCCTTCCCTGCTTGGCACCATGTCTGGCTGTGCTGCAGACTGTCAGTACTGGGAGCGTCTGCTGGCCAAAG
AGTGCAGGCTGTACTACCTGCGGAACGGGGAGCGTATCTCAGTGTCAGCAGCCTCCAAACTGCTCTCCAACATGGTGTAC
CAGTACCGGGGCATGGACCTCTCCATGGGCAGTATGATCTGTGGCTGGGATAAGAAGGGTCCTGGACTCTACTATGTGGA
TCAAAATGGGACTCGGCTCTCAGGAAATATGTTCTCCACTGGCAGTGGGAGCACTTATGCCTATGGGGTCATGGATAGTG
GCTATCAGCCCAGTCTCAGCCCTGAAGAGGCCTATGAACTGGGCCGCAGGGCTATTACTTATGCCACCCACCGAGACAGC
TATTCTGGCGGTATTATCAACATGTACCACATGAAGGAAGATGGTTGGGTGAAAGTGGAAAGTACAGATGTCAATGAACT
ACTGCACCAATACCAAGAGGCCAATCAGTAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 5 .59 RPM
SRP017611_brain 3 .81 RPM
SRP017611_kidney 7 .26 RPM
SRP017611_liver 9 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002026 ortholog_one2one 1 retrogene
retro_amel_27,
Bos taurus ENSBTAG00000003039 ortholog_one2one 1 retrogene
retro_btau_11,
Equus caballus ENSECAG00000018887 ortholog_one2one 1 retrogene
retro_ecab_18,
Felis catus ENSFCAG00000023131 ortholog_one2one 1 retrogene
retro_fcat_30,
Loxodonta africana ENSLAFG00000003213 ortholog_one2one 1 retrogene
retro_lafr_65,
Microcebus murinus ENSMICG00000015254 ortholog_one2one 1 retrogene
retro_mmur_33,
Myotis lucifugus ENSMLUG00000013876 ortholog_one2one 1 retrogene
retro_mluc_285,
Monodelphis domestica ENSMODG00000014366 ortholog_one2one 1 retrogene
retro_mdom_179,
Otolemur garnettii ENSOGAG00000013830 ortholog_one2one 1 retrogene
retro_ogar_256,
Procavia capensis ENSPCAG00000016741 ortholog_one2one 1 retrogene
retro_pcap_21,
Pan troglodytes ENSPTRG00000018022 ortholog_one2one 2 retrogenes
retro_ptro_1102, retro_ptro_97,
Pteropus vampyrus ENSPVAG00000002800 ortholog_one2one 1 retrogene
retro_pvam_20,
Sus scrofa ENSSSCG00000026951 ortholog_one2many 1 retrogene
retro_sscr_90,
Tupaia belangeri ENSTBEG00000007794 ortholog_one2one 1 retrogene
retro_tbel_2055,
Tarsius syrichta ENSTSYG00000007730 ortholog_one2one 1 retrogene
retro_tsyr_1639,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_75 52.68 74.28
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Download FASTA sequences of all ENSCAFG00000000829 retrocopies