Parental gene:

PSMB8, ENSSSCG00000026951

Aliases:None
Description:Sus scrofa proteasome (prosome, macropain) subunit, beta type, 8 (large multifunctional peptidase 7) (PSMB8), mRNA. [Source:RefSeq mRNA;Acc:NM_213935]
Organism:Pig (Sus scrofa)
Coordinates:7:29269957..29273035(-)


>ENSSSCG00000026951
ATGGCGCTGCTGGATGTTTGCGGAGCCCCCCGAGCGCAGCAGGAAGACTGGGCTTTCCCAGCCGCGGAAAGCCGGCAGCG
CTCGGACCCTGGTCACTACAGTTTCTCTATGCGATCTCCGGAACTCGCCCTCCCCCGGGGAATGCAGCCCACTGAATTCC
TCCGGTCCCTGGGTGGGGATGGAGAAAGGAACGTACAGATTGAGATGGCTCATGGCACTACCACGCTGGCCTTCAAGTTC
CAGCACGGAGTGATTGTGGCGGTGGATTCTCGGGCCTCGGCCGGGAGTTACATTGCCACATTAAGAGTGAACAAGGTGAT
TGAGATTAACCCTTACCTGCTTGGCACCATGTCTGGCTCTGCGGCAGACTGTCAGTATTGGGAGCGTCTGCTGGCCAAGG
AGTGCAGGTTGTACTATCTGCGGAATGGGGACCGTATCTCAGTGTCCGCAGCCTCCAAACTGCTCTCCAATATGATGTAC
CAGTACCGGGGCATGGGCCTCTCCATGGGCAGTATGATCTGTGGCTGGGACAAGAAGGGTCCTGGACTCTACTATGTGGA
TGAAAATGGGACTCGGCTCTCGGGAAATATGTTCTCCACTGGTAGCGGGAACACCTACGCTTATGGGGTCATGGACAGTG
GCCATCGGTACGATCTTAGCATTGAAGAGGCCTATGACCTGGGCCGGAGGGCTATTGTTCATGCCACTCATCGAGACAGC
TATTCTGGAGGCGTTGTCAATATGTACCACATGAAGGAAGATGGGTGGGTGAAGGTGGAGAGTACGGACGTCAGTGACCT
GATGCACCAGTACCGGGAGGCCAGTCTGTAA

Library Parental gene expression (RPM)
SRP014902_placenta 0 .00 RPM
SRP014902_testis 0 .00 RPM
SRP018288_heart 0 .00 RPM
SRP018288_kidney 0 .00 RPM
SRP018288_liver 0 .00 RPM
SRP018288_lung 0 .00 RPM
SRP018856_adipose 0 .00 RPM
SRP035408_brain 0 .00 RPM
SRP035408_liver 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002026 ortholog_one2many 1 retrogene
retro_amel_27,
Bos taurus ENSBTAG00000003039 ortholog_one2many 1 retrogene
retro_btau_11,
Canis familiaris ENSCAFG00000000829 ortholog_one2many 1 retrogene
retro_cfam_75,
Equus caballus ENSECAG00000018887 ortholog_one2many 1 retrogene
retro_ecab_18,
Felis catus ENSFCAG00000023131 ortholog_one2many 1 retrogene
retro_fcat_30,
Loxodonta africana ENSLAFG00000003213 ortholog_one2many 1 retrogene
retro_lafr_65,
Microcebus murinus ENSMICG00000015254 ortholog_one2many 1 retrogene
retro_mmur_33,
Myotis lucifugus ENSMLUG00000013876 ortholog_one2many 1 retrogene
retro_mluc_285,
Monodelphis domestica ENSMODG00000014366 ortholog_one2many 1 retrogene
retro_mdom_179,
Otolemur garnettii ENSOGAG00000013830 ortholog_one2many 1 retrogene
retro_ogar_256,
Procavia capensis ENSPCAG00000016741 ortholog_one2many 1 retrogene
retro_pcap_21,
Pan troglodytes ENSPTRG00000018022 ortholog_one2many 2 retrogenes
retro_ptro_1102, retro_ptro_97,
Pteropus vampyrus ENSPVAG00000002800 ortholog_one2many 1 retrogene
retro_pvam_20,
Sus scrofa ENSSSCG00000002036 within_species_paralog 1 retrogene
retro_sscr_616,
Tupaia belangeri ENSTBEG00000007794 ortholog_one2many 1 retrogene
retro_tbel_2055,
Tarsius syrichta ENSTSYG00000007730 ortholog_one2many 1 retrogene
retro_tsyr_1639,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_90 51.69 75.00
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Download FASTA sequences of all ENSSSCG00000026951 retrocopies