Parental gene:

CCT4, ENSCAFG00000003083

Aliases:None
Description:chaperonin containing TCP1, subunit 4 (delta) [Source:HGNC Symbol;Acc:1617]
Organism:Dog (Canis familiaris)
Coordinates:10:61857580..61873913(-)


>ENSCAFG00000003083
ATGCCCGAGAACGCGGCTCCGCGGAGCGGGGCGCCCGCCGCAGCCGCCGGCGGCCGCAGCAAAACCGCCTACCAGGACCG
CGACAAGCCGGCGCAGATCCGCTTCAGCAACATCTCCGCGGCCAAAGCTGTTGCTGATGCTATTAGAACAAGCCTTGGAC
CAAAAGGAATGGATAAAATGATTCAAGATGGAAAAGGCGATGTGACCATTACAAATGATGGTGCCACCATTCTTAAACAG
ATGCAAGTGTTACATCCAGCAGCCAGAATGCTGGTAGAGCTGTCTAAGGCACAAGATATAGAAGCAGGAGATGGCACCAC
ATCAGTGGTCATCATTGCTGGCTCTCTCTTAGATTCCTGTACCAAGCTTCTTCAGAAAGGGATTCATCCAACCATCATTT
CTGAGTCATTCCAGAAGGCTTTAGAAAAGGGTATAGAAATCTTGACTGACATGTCTCGACCTGTGGAACTGAGTGACAGA
GAAACTTTATTAAATAGTGCTACCACTTCCTTGAACTCAAAGGTTGTGTCTCAGTATTCAAGTCTGCTTTCTCCAATGAG
TGTAAATGCAGTGATGAAAGTTATTGACCCAGCCACGGCTACTAGTGTAGATCTTAGAGACATTAAAATAGTTAAGAAAC
TTGGTGGGACAATTGATGACTGTGAGCTGGTAGAAGGGCTGGTACTTACTCAGAAGGTGGCAAATTCTGGCATAACTAGA
GTTGAAAAGGCTAAGATTGGGCTTATTCAGTTTTGCTTATCTGCTCCCAAAACGGATATGGATAATCAAATTGTAGTTTC
TGACTATGTCCAGATGGATCGAGTGCTTCGGGAGGAGAGAGCCTATATCCTCAATTTAGTGAAGCAAATTAAAAAAACAG
GATGTAATGTCCTCCTCATACAGAAGTCTATCCTGAGAGATGCTCTTAGTGATCTTGCATTACATTTCCTGAACAAGATG
AAGATTATGGTGGTTAAGGATATTGAAAGAGAAGACATTGAATTCATTTGTAAGACAATTGGAACCAAGCCAGTTGCTCA
TATTGACCAATTCACTGCTGATATGCTGGGATCGGCTGAGTTAGCTGAGGAGGTCAATTTAAATGGTTCTGGCAAACTGC
TTAAGATTACAGGCTGTACAAGCCCCGGAAAAACAGTTACAATTGTTGTTCGTGGATCTAACAAATTGGTGATTGAAGAA
GCTGAGCGCTCTATTCATGATGCCCTATGTGTTATTCGCTGTTTAGTGAAGAAGAGAGCTCTTATTGCAGGAGGTGGTGC
TCCAGAGATAGAATTGGCCCTGCGGTTAACTGAATATTCACGAACATTGAGTGGCATGGAATCCTACTGCGTTCGTGCTT
TTGCAGATGCTATGGAAGTCATTCCATCTACACTAGCTGAAAATGCTGGCCTGAATCCCATTTCTACAGTAACAGAACTA
AGAAACCGACATGCCCAAGGAGAAAAAACTACCGGCATAAATGTCCGAAAGGGTGGTATTTCCAACATTTTGGAGGAACT
GGTTGTCCAGCCTTTGTTGGTTTCAGTCAGTGCACTGACTCTAGCAACTGAAACCGTCCGGAGCATTCTGAAAATTGATG
ATGTGGTAAATACTCGGTAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 92 .94 RPM
SRP017611_brain 88 .28 RPM
SRP017611_kidney 136 .90 RPM
SRP017611_liver 83 .97 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000008703 ortholog_one2one 1 retrogene
retro_cjac_724,
Equus caballus ENSECAG00000016982 ortholog_one2one 1 retrogene
retro_ecab_148,
Microcebus murinus ENSMICG00000015263 ortholog_one2one 1 retrogene
retro_mmur_344,
Macaca mulatta ENSMMUG00000013973 ortholog_one2one 1 retrogene
retro_mmul_2500,
Monodelphis domestica ENSMODG00000002882 ortholog_one2one 1 retrogene
retro_mdom_1402,
Otolemur garnettii ENSOGAG00000003974 ortholog_one2one 2 retrogenes
retro_ogar_1041, retro_ogar_1931,
Sorex araneus ENSSARG00000010539 ortholog_one2many 1 retrogene
retro_sara_7,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_590 93.68 96.85
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2. retro_cfam_2093 83.75 51.76
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Download FASTA sequences of all ENSCAFG00000003083 retrocopies