Parental gene:

CCT4, ENSECAG00000016982

Aliases:None
Description:chaperonin containing TCP1, subunit 4 (delta) [Source:HGNC Symbol;Acc:1617]
Organism:Horse (Equus caballus)
Coordinates:15:39398435..39410638(+)


>ENSECAG00000016982
GCTGTTGCTGATGCTATTAGAACAAGCCTTGGACCAAAAGGAATGGATAAAATGATTCAAGATGGAAAAGGTGATGTGAC
CATTACAAATGATGGTGCTACCATTCTGAAACAAATGCAGGTGTTACATCCAGCAGCCAGAATGCTGGTGGAGTTGTCTA
AGGCTCAGGATATAGAAGCAGGAGATGGCACCACATCGGTGGTCATCATTGCTGGCTCTCTCTTAGATTCGTGTACCAAA
CTTCTTCAGAAAGGGATTCATCCAACCATCATTTCTGAGTCATTCCAGAAGGCTTTGGAAAAGGGTATTGAAATATTGAC
TGATATGTCTCGACCTGTGGAACTAAGTGACAGAGAAACTTTGTTAAATAGTGCGGCCACTTCATTGAACTCAAAGGTTG
TCTCTCAGTATTCAAGTCTCCTTTCTCCAATGAGTGTAAATGCAGTGATGAAAGTGATTGACCCAGCCACAGCTACTAGT
GTAGATCTTAGAGATATTAAAATAGTTAAGAAACTTGGTGGGACAATTGATGATTGTGAGTTGGTAGAAGGGCTGGTTCT
CACTCAAAAGGTGGCAAATTCTGGCATAACCAGAGTTGAAAAGGCTAAGATTGGGCTTATTCAGTTTTGCTTATCTGCTC
CCAAAACAGATATGGATAACCAAATAGTAGTTTCAGACTACGTCCAGATGGACCGAGTGCTGCGAGAGGAGAGAGCCTAT
ATTCTAAATTTAGTGAAGCAAATTAAAAAAACAGGATGTAATGTCCTCCTCATCCAGAAGTCTATTCTAAGAGATGCTCT
TAGTGATCTTGCATTACATTTCCTGAACAAAATGAAGATTATGGTGGTTAAGGATATTGAAAGAGAAGACATTGAATTCA
TTTGTAAGACAATTGGAACCAAACCAGTTGCTCACATTGACCAGTTCACTGCTGACATGCTAGGATCAGCCGAGTTAGCT
GAGGAGGTCAATTTAAATGGTTCTGGCAAACTGCTCAAGATTACAGGCTGTACAAGCCCTGGAAAAACAGTTACAATTGT
GGTTCGTGGTTCGAACAAATTGGTGATTGAAGAAGCTGAGCGCTCTATTCATGATGCCCTATGTGTTATTCGCTGTTTAG
TGAAGAAGAGAGCTCTTATTGCAGGAGGTGGTGCTCCAGAAATAGAGTTGGCCCTCCGGTTAACTGAGTATTCACGAACA
TTGAGTGGTATGGAATCCTACTGTGTTCGAGCTTTTGCAGATGCTATGGAGGTCATTCCATCTACACTGGCTGAAAATGC
TGGCCTGAATCCCATTTCTACGGTGACAGAACTAAGAAACCGTCATGCCCAAGGAGAAAAAACTACAGGCATTAATGTCC
GAAAGGGTGGTATTTCCAACATTTTGGAGGAACTGGTTGTCCAGCCTCTTTTGGTTTCAGTCAGTGCACTGACTCTAGCA
ACTGAAACTGTCCGAAGCATCTTGAAAATTGATGATGTAGTAAACACTCGGTAA

Library Parental gene expression (RPM)
SRP021940_articular_cartilage 29 .46 RPM
SRP021940_cerebellum 91 .04 RPM
SRP021940_embryo 103 .29 RPM
SRP021940_placental_villous 58 .21 RPM
SRP021940_synovial_membrane 51 .66 RPM
SRP021940_testis 189 .02 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000003083 ortholog_one2one 2 retrogenes
retro_cfam_2093, retro_cfam_590,
Callithrix jacchus ENSCJAG00000008703 ortholog_one2one 1 retrogene
retro_cjac_724,
Microcebus murinus ENSMICG00000015263 ortholog_one2one 1 retrogene
retro_mmur_344,
Macaca mulatta ENSMMUG00000013973 ortholog_one2one 1 retrogene
retro_mmul_2500,
Monodelphis domestica ENSMODG00000002882 ortholog_one2one 1 retrogene
retro_mdom_1402,
Otolemur garnettii ENSOGAG00000003974 ortholog_one2one 2 retrogenes
retro_ogar_1041, retro_ogar_1931,
Sorex araneus ENSSARG00000010539 ortholog_one2many 1 retrogene
retro_sara_7,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_148 72.99 61.37
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Download FASTA sequences of all ENSECAG00000016982 retrocopies