Parental gene:

CCT4, ENSCJAG00000008703

Aliases:None
Description:T-complex protein 1 subunit delta [Source:UniProtKB/TrEMBL;Acc:F6YPL5]
Organism:Marmoset (Callithrix jacchus)
Coordinates:14:45315339..45333231(+)


>ENSCJAG00000008703
ATGCCTGAGAATGTGGCACCCCGGAGTGGGGCGCCTGCCGGGGCTGCCGGCGGCCGCGGGAAGGGCGCCTATCAGGACCG
CGATAAGCCAGCCCAGATCCGCTTCAGCAACATTTCCGCCGCCAAAGCGGTTGCTGATGCTATTAGAACAAGCCTTGGAC
CAAAAGGAATGGATAAAATGATTCAAGATGGAAAAGGTGATGTAACCATTACAAATGATGGTGCTACCATTCTGAAACAA
ATGCAAGTATTACATCCAGCAGCAAGAATGCTGGTGGAGCTGTCTAAGGCTCAAGATATAGAAGCAGGAGATGGTACCAC
ATCAGTAGTCATCATTGCTGGCTCTCTCTTAGATTCTTGTACCAAGCTTCTTCAGAAAGGGATTCATCCAACCATCATTT
CCGAGTCATTCCAGAAGGCCCTGGAAAAGGGAATTGAAATCTTGACTGACATGTCTCGACCTGTGGAACTGAGTGACAGA
GAAACTTTGTTAAATAGTGCAACCACTTCATTGAACTCAAAGGTTGTTTCTCAGTATTCAAGTCTGCTTTCTCCAATGAG
TGTAAATGCAGTGATGAAAGTGATTGACCCAGGAACAGCCACCAGTGTAGATCTTAGAGATATTAAAATAGTTAAGAAGC
TTGGTGGGACAATTGATGACTGTGAGTTGGTGGAAGGGCTGGTTCTCACCCAAAAAGTGTCAAATTCCGGCATAACCAGA
GTTGAAAAGGCCAAGATTGGACTTATTCAGTTTTGCTTATCTGCTCCCAAAACAGATATGGATAATCAAATAGTGGTTTC
TGACTATGCCCAGATGGACCGAGTGCTTCGAGAAGAGAGAGCCTATATTTTAAATTTAGTGAAGCAAATTAAAAAAACAG
GATGTAATGTCCTTCTTATACAGAAGTCTATTCTAAGAGACGCTCTTAGTGATCTTGCATTACACTTTCTGAACAAAATG
AAGATAATGGTGATTAAGGATATTGAAAGAGAAGACATTGAATTTATTTGTAAGACAATTGGAACCAAACCAGTTGCTCA
TATTGACCAATTTACTGCTGACATGCTGGGTTCTGCCGAGTTAGCTGAGGAGGTCAATTTAAATGGTTCTGGCAAACTGC
TCAAGATTACAGGCTGTGCCAGCCCTGGAAAAACAGTTACAATTGTTGTTCGTGGTTCTAACAAACTGGTGATTGAGGAA
GCTGAGCGCTCCATTCATGATGCCCTTTGTGTTATTCGCTGTTTAGTGAAGAAGAGGGCTCTTATTGCAGGAGGTGGCGC
TCCAGAAATAGAGTTGGCCCTACGATTAACTGAATATTCGCGAACACTGAGTGGTATGGAATCCTACTGTGTTCGTGCTT
TTGCAGATGCTATGGAGGTCATTCCATCTACACTAGCTGAAAATGCCGGCCTGAATCCCATTTCTACAGTTACAGAACTA
AGAAACCGGCATGCCCAGGGAGAAAAAACTGCAGGCATTAATGTCAGAAAGGGTGGTATTTCCAACATTTTGGAGGAACT
GGTTGTCCAGCCTCTGTTGGTGTCAGTCAGTGCTCTGACCCTTGCAACTGAAACTGTTCGGAGCATTCTGAAAATTGATG
ATGTGGTAAACACTCGATAA

Library Parental gene expression (RPM)
SRP051959_spleen 47 .84 RPM
SRP051959_skeletal_muscle 43 .52 RPM
SRP051959_lymph_node 50 .66 RPM
SRP051959_lung 38 .65 RPM
SRP051959_liver 52 .48 RPM
SRP051959_kidney 39 .58 RPM
SRP051959_heart 37 .12 RPM
SRP051959_colon 42 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000003083 ortholog_one2one 2 retrogenes
retro_cfam_2093, retro_cfam_590,
Equus caballus ENSECAG00000016982 ortholog_one2one 1 retrogene
retro_ecab_148,
Microcebus murinus ENSMICG00000015263 ortholog_one2one 1 retrogene
retro_mmur_344,
Macaca mulatta ENSMMUG00000013973 ortholog_one2one 1 retrogene
retro_mmul_2500,
Monodelphis domestica ENSMODG00000002882 ortholog_one2one 1 retrogene
retro_mdom_1402,
Otolemur garnettii ENSOGAG00000003974 ortholog_one2one 2 retrogenes
retro_ogar_1041, retro_ogar_1931,
Sorex araneus ENSSARG00000010539 ortholog_one2many 1 retrogene
retro_sara_7,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_724 98.52 100.00
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Download FASTA sequences of all ENSCJAG00000008703 retrocopies