Parental gene:

CCT4, ENSMODG00000002882

Aliases:None
Description:chaperonin containing TCP1, subunit 4 (delta) [Source:HGNC Symbol;Acc:1617]
Organism:Opossum (Monodelphis domestica)
Coordinates:1:630559194..630586647(+)


>ENSMODG00000002882
ATGCCGGAGAACATGGGTCCCAGGAACAACGGGCCTGCCGGAGGTTCCGGCAATCGAGGGAGAGGCGCTTACCAGGATCG
GGACAAACCGGCCCAGATCCGCTTCAGCAACATTTCTGCCGCCAAAGCGGTTACAGATGCTATTAGAACTAGCCTTGGAC
CGAAAGGAATGGACAAAATGATTCAAGATGGAAAAGGCGATGTGACTATTACCAATGATGGTGCTACAATTTTGAAACAA
ATGCAGATTCTGTATCTAGGGAGCATAAATTCTTTGGTGGAGCTCTCAAAAGCACAAGATATTGAAGCTGGTGATGGTAC
CACATCTGTTGTTATCATTGCTGGATCTCTTTTGGACTCCTGTACCAAACTTCTTCAAAAGGGGATTCACCCAACCATCA
TTTCTGAATCATTCCAAAAAGCTGTGGATCAAGGTGTTGAAGTCTTAACTAAAATGTCACAGCCAGTGGAACTGAGTGAC
AGAGAAACATTACTAAATAGTGCAACCACTTCACTAAACTCAAAGGTTGTATCTCAGTACTCAAGCCTGCTTTCTCCAAT
GAGTGTAGATGCTGTGATGAAGGTGATTGACCCAACAACAGCTACTAGTGTAGATCTTCGAGACATTAAAATAGTTAAGA
AACTTGGTGGGACAATTGACGACTGTGAACTGGTGGAAGGATTGGTCCTAACTCAGAAAGTGGCAAATACTGGCATAACC
AGAGTTGAGAAAGCTAAGATTGGTCTCATTCAGTTTTGTTTATCTGCTCCTAAAACAGATATGGATAATCAAATTGTAGT
TTCTGACTACGCTCAAATGGACAGAGTACTGCGGGAAGAGAGAGCTTATATTCTCAATTTAGTGAAGCAGATTAAGAAAT
CTGGATGTAATGTACTCCTTATACAGAAATCTATTCTAAGGGATGCCCTCAGTGATCTTGCATTACATTTCCTAAACAAA
ATGAAGATTATGGTGGTTAAAGATATTGAAAGAGAGGACATTGAATTTATTTGTAAGACAATTGGAACCAAACCAGTTGC
TCATATTGACCAGTTTACTGCTGAAATGCTTGGTTCTGCTGAACTGGCAGAGGAGGTCAATTTAAACGGTTCTGGCAAGC
TGCTCAAAATTACAGGTTGCACAAGCCCTGGAAAGACAGTTACTATTGTTGTTCGTGGATCTAACAAATTGGTGATTGAA
GAAGCCGAGCGTTCAATTCATGATGCTTTATGTGTTATTCGCTGTTTGGTAAAAAAGAGAGCACTGATCGCAGGAGGTGG
TGCACCAGAGATAGAGCTGGCCTTGCGTTTAACAGAATATTCACGCACTTTGAGTGGGATGGAGTCATACTGCGTCCGTG
CTTTTGCAGATGCTATGGAAGTCATTCCATCTACTCTGGCTGAAAATGCAGGCCTTAATCCCATTTCCACTGTAACAGAA
TTAAGAAATCGGCATGCTCAAGGAGAGACTACTGCAGGCATTAATGTCCGAAAGGGTGGAATTTCCAACATTTTGGAGGA
GCTAGTAGTTCAGCCTTTGTTGGTGTCTGTCAGTGCTCTGACCCTAGCTACTGAAACTGTCCGAAGCATTCTCAAGATTG
ATGATGTGGTAAGTTTTATG

Library Parental gene expression (RPM)
SRP007412_brain 280 .47 RPM
SRP007412_cerebellum 0 .00 RPM
SRP007412_heart 0 .00 RPM
SRP007412_kidney 0 .00 RPM
SRP007412_liver 0 .00 RPM
SRP007412_testis 362 .22 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000003083 ortholog_one2one 2 retrogenes
retro_cfam_2093, retro_cfam_590,
Callithrix jacchus ENSCJAG00000008703 ortholog_one2one 1 retrogene
retro_cjac_724,
Equus caballus ENSECAG00000016982 ortholog_one2one 1 retrogene
retro_ecab_148,
Microcebus murinus ENSMICG00000015263 ortholog_one2one 1 retrogene
retro_mmur_344,
Macaca mulatta ENSMMUG00000013973 ortholog_one2one 1 retrogene
retro_mmul_2500,
Otolemur garnettii ENSOGAG00000003974 ortholog_one2one 2 retrogenes
retro_ogar_1041, retro_ogar_1931,
Sorex araneus ENSSARG00000010539 ortholog_one2many 1 retrogene
retro_sara_7,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mdom_1402 93.75 59.07
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Download FASTA sequences of all ENSMODG00000002882 retrocopies