Parental gene:

ZCCHC17, ENSCAFG00000011131

Aliases:None
Description:zinc finger, CCHC domain containing 17 [Source:HGNC Symbol;Acc:30246]
Organism:Dog (Canis familiaris)
Coordinates:2:69659910..69710436(-)


>ENSCAFG00000011131
ATGAATTCAGGAAGACCCGAGACCATGGAGAACTTGCCTGCTCTCTACACTATTTTCCAAGGAGAGGTTGCTATGGTTAC
AGACTATGGAGCCTTCATCAAAATCCCTGGCTGTCGGAAGCAAGGTCTGGTCCATCGAACTCACATGTCATCCTGTCGTG
TGGATAAGCCCTCTGAGATAGTGGATGTTGGAGACAAAGTGTGGGTGAAGCTTATTGGCCGGGAGATGAAAAATGATAGG
ATAAAAGTATCCCTATCCATGAAAGTCGTCAACCAAGGAACTGGGAAAGACCTTGACCCCAACAACGTTATCATTGAGCA
AGAAGAGAGGCGGCGGCGGTCCTTCCAGGATTACACTGGGCAGAAGATCACCCTCGAGGCTGTCCTGAACACCACCTGCA
AGAAGTGTGGCTGTAAAGGCCACTTTGCAAAGGATTGTTTTATGCAACCAGGAGGGACCAAGTATTCTCTGATACCGGAT
GAGGAAGAGGAGAAGGAAGAGGCAAAGTCAGCAGAATTTGAGAAGCCTGACCCCACAAGGAATTCTTCTAGAAAAAGAAA
GAAGGAAAAGAAGAAAAAAAAACATAGAGACAGGAAGTCATCTGACTCTGACAGCTCAGACTCTGAGAGTGACACAGGCA
AGAGGGCAAGGCACACATCAAAAGACAGCAAGGCAGCAAAGAAGAAGAAGAAGAAGAAGAAGCATAAGAAGAAACACAAG
GAGTGA

Library Parental gene expression (RPM)
SRP012049_cerebellum 21 .29 RPM
SRP017611_brain 31 .60 RPM
SRP017611_kidney 10 .96 RPM
SRP017611_liver 4 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017710 ortholog_many2many 1 retrogene
retro_amel_1501,
Bos taurus ENSBTAG00000016818 ortholog_one2many 2 retrogenes
retro_btau_168, retro_btau_273,
Callithrix jacchus ENSCJAG00000006259 ortholog_one2one 1 retrogene
retro_cjac_4218,
Dasypus novemcinctus ENSDNOG00000000509 possible_ortholog 1 retrogene
retro_dnov_2548,
Dipodomys ordii ENSDORG00000004128 ortholog_one2many 1 retrogene
retro_dord_200,
Echinops telfairi ENSETEG00000007421 ortholog_one2many 1 retrogene
retro_etel_1280,
Loxodonta africana ENSLAFG00000015364 ortholog_one2many 1 retrogene
retro_lafr_534,
Myotis lucifugus ENSMLUG00000000594 possible_ortholog 1 retrogene
retro_mluc_2176,
Monodelphis domestica ENSMODG00000017082 ortholog_many2many 1 retrogene
retro_mdom_252,
Mustela putorius furo ENSMPUG00000015442 possible_ortholog 1 retrogene
retro_mputfur_680,
Mus musculus ENSMUSG00000028772 ortholog_one2many 1 retrogene
retro_mmus_2150,
Otolemur garnettii ENSOGAG00000013749 ortholog_one2many 1 retrogene
retro_ogar_1225,
Sorex araneus ENSSARG00000007944 possible_ortholog 1 retrogene
retro_sara_691,
Ictidomys tridecemlineatus ENSSTOG00000003825 ortholog_one2many 1 retrogene
retro_itri_405,
Tursiops truncatus ENSTTRG00000014870 ortholog_one2one 2 retrogenes
retro_ttru_1383, retro_ttru_1613,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_485 87.55 95.85
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2. retro_cfam_835 86.75 97.10
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Download FASTA sequences of all ENSCAFG00000011131 retrocopies