Parental gene:

ZCCHC17, ENSCJAG00000006259

Aliases:None
Description:zinc finger, CCHC domain containing 17 [Source:HGNC Symbol;Acc:30246]
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:65505314..65581083(+)


>ENSCJAG00000006259
ATGAATTCAGGAAGGCCCGAGACCATGGAAAACTTGCCTGCTCTCTACACTATTTTCCAAGGAGAGGTTGCTATGGTGAC
AGACTATGGAGCCTTTATCAAAATCCCAGGCTGTCGGAAACAAGGTCTGGTCCATCGAACTCATATGTCATCCTGTCGGG
TGGATAAGCCCTCTGAGATAGTAGATGTCGGAGACAAAGTATGGGTGAAGCTTATTGGCCGAGAGATGAAAAATGATAGG
ATAAAAGTATCCCTCTCCATGAAAGTTGTCAACCAAGGGACTGGGAAAGACCTTGATCCCAACAACATTATCATTGAGCA
AGAAGAGAGGCGGAGGCGGTCCTTCCAGGATTACACTGGGCAGAAGATCACCCTTGAGGCTGTTTTGAACACTACTTGCA
AGAAGTGTGGCTGTAAAGGCCACTTTGCAAAAGATTGTTTCATGCAACCAGGTGGGACTAAATATTCTCTGATACCTGAC
GAGGAAGAGGAAAAGGAAGAGCCAAAGTCAGCAGAGTTTGAGAAGCCCAACCCCACAAGGAATTCTTCTAGAAAAAGAAA
GAAGGAGAAGAAGAAAAAGAAACATAGAGACAGGAAGTCGTCTGATTCTGACAGCTCAGACTCTGAGAGTGAAACAGGCA
AGAGGGCAAGGCACACATCAAAAGATAGCAAGGCAGCAAAGAAGAAGAAAAAGAAGAAGAAGCACAAGAAGAAACACAAG
GAGTGA

Library Parental gene expression (RPM)
SRP051959_spleen 11 .43 RPM
SRP051959_skeletal_muscle 6 .81 RPM
SRP051959_lymph_node 10 .23 RPM
SRP051959_lung 10 .44 RPM
SRP051959_liver 6 .32 RPM
SRP051959_kidney 9 .41 RPM
SRP051959_heart 9 .58 RPM
SRP051959_colon 10 .94 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017710 ortholog_one2many 1 retrogene
retro_amel_1501,
Bos taurus ENSBTAG00000016818 ortholog_one2many 2 retrogenes
retro_btau_168, retro_btau_273,
Canis familiaris ENSCAFG00000011131 ortholog_one2one 2 retrogenes
retro_cfam_485, retro_cfam_835,
Dipodomys ordii ENSDORG00000004128 ortholog_one2one 1 retrogene
retro_dord_200,
Echinops telfairi ENSETEG00000007421 ortholog_one2one 1 retrogene
retro_etel_1280,
Loxodonta africana ENSLAFG00000015364 ortholog_one2one 1 retrogene
retro_lafr_534,
Monodelphis domestica ENSMODG00000017082 ortholog_one2many 1 retrogene
retro_mdom_252,
Mus musculus ENSMUSG00000028772 ortholog_one2one 1 retrogene
retro_mmus_2150,
Otolemur garnettii ENSOGAG00000013749 ortholog_one2one 1 retrogene
retro_ogar_1225,
Ictidomys tridecemlineatus ENSSTOG00000003825 ortholog_one2one 1 retrogene
retro_itri_405,
Tursiops truncatus ENSTTRG00000014870 ortholog_one2one 2 retrogenes
retro_ttru_1383, retro_ttru_1613,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_4218 98.23 93.78
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Download FASTA sequences of all ENSCJAG00000006259 retrocopies