Parental gene:

ENSCAFG00000012222

Aliases:None
Description:Elongation factor 1-alpha [Source:UniProtKB/TrEMBL;Acc:E2QW85]
Organism:Dog (Canis familiaris)
Coordinates:11:12968893..12970496(+)


>ENSCAFG00000012222
ATGGGAAAGGAGAAGACTCACATCAACATCGTCGTCATTGGACACGTAGATTCGGGCAAGTCTACCACTACTGGCCATCT
GATCTACAAATGTGGTGGGATCGACAAAAGAACTATCGAAAAATTTGAGAAGGAGGCTGCTGAGATGGGAAAAGGCTCCT
TCAAGTATGCCTGGGTCTTGGATAAACTGAAAGCTGAACGTGAACGTGGTATCACCATTGATATCTCCCTGTGGAAATTC
GAGACCAGCAAGTATTATGTGACCATCATTGATGCCCCAGGACACAGAGACTTTATCAAAAACATGATTACAGGCACATC
TCAGGCTGACTGTGCTGTCCTGATTGTTGCTGCTGGTGTTGGTGAATTTGAAGCAGGTATCTCCAAGAATGGGCAGACCC
GTGAGCATGCCCTTCTGGCTTACACACTGGGTGTAAAACAACTAATTGTTGGTGTTAACAAAATGGATTCCACTGAACCA
CCCTACAGCCAGAAGAGATACGAGGAAATCGTTAAAGAAGTCAGCACCTACATTAAGAAAATTGGCTACAACCCCAACAC
AGTAGCATTTGTGCCAATTTCTGGTTGGAATGGTGACAACATGCTGGAGCCAAGTGCTAACATGCCTTGGTTCGGATGGA
AAGTCACCCGTAAAGATGGGAATGCCAGCGGAACCACACTGCTTGAAGCCCTGGATTGCATTCTGCCACCAACTCGTCCA
ACTGATAAGCCCTTGCGTCTGCCTCTCCAAGACGTCTACAAAATTGGTGGTATTGGTACTGTCCCAGTGGGTCGAGTGGA
GACTGGTGTTCTTAAGCCTGGTATGGTGGTCACCTTTGCTCCAGTCAATGTTACAACTGAAGTAAAGTCTGTTGAAATGC
ACCATGAAGCTTTGAGTGAGGCTCTTCCTGGGGACAATGTGGGCTTCAATGTCAAGAACGTATCTGTCAAAGATGTTCAT
CGTGGCAACGTGGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACAGCTCAGGTGATTATCCTGAA
CCATCCAGGCCAAATCAGTGCTGGATATGCACCTGTGCTGGATTGTCACACAGCTCACATTGCCTGCAAGTTTGCTGAGC
TGAAGGAAAAGATAGATCGTCGTTCTGGAAAGAAGCTGGAAGATGGTCCCAAGTTCTTGAAATCTGGGGATGCTGCCATT
ATTGATATGGTTCCTGGCAAACCTATGTGTGTTGAGAGCTTCTCTGACTATCCTCCTCTGGGCTGTTTTGCTGTTCGTGA
CATGAGACAGACGGTTGCTGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCAGCTGGAGCTGGCAAAGTCACCAAGTCTG
CCCAGAAAGCTCAGAAGGCTAAATGA

Library Parental gene expression (RPM)
SRP012049_cerebellum 0 .50 RPM
SRP017611_brain 0 .32 RPM
SRP017611_kidney 3 .63 RPM
SRP017611_liver 0 .94 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000013249 within_species_paralog 1 retrogene
retro_cfam_1007,
Dipodomys ordii ENSDORG00000009629 possible_ortholog 1 retrogene
retro_dord_509,
Equus caballus ENSECAG00000022260 possible_ortholog 1 retrogene
retro_ecab_802,
Erinaceus europaeus ENSEEUG00000000342 possible_ortholog 3 retrogenes
retro_eeur_407, retro_eeur_492, retro_eeur_625,
Loxodonta africana ENSLAFG00000028081 possible_ortholog 1 retrogene
retro_lafr_651,
Monodelphis domestica ENSMODG00000018533 possible_ortholog 4 retrogenes
retro_mdom_1053, retro_mdom_1146, retro_mdom_311, retro_mdom_792,
Mus musculus ENSMUSG00000037742 possible_ortholog 15 retrogenes
retro_mmus_1349, retro_mmus_1518, retro_mmus_1667, retro_mmus_1783, retro_mmus_1816, retro_mmus_1849, retro_mmus_1850, retro_mmus_1864, retro_mmus_1909, retro_mmus_2363, retro_mmus_2583, retro_mmus_2902, retro_mmus_3249, retro_mmus_480, retro_mmus_483,
Ictidomys tridecemlineatus ENSSTOG00000007687 possible_ortholog 4 retrogenes
retro_itri_1509, retro_itri_1740, retro_itri_1816, retro_itri_195,
Drosophila melanogaster FBgn0000557 ortholog_many2many 1 retrogene
retro_dmel_9,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1478 89.87 83.30
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Download FASTA sequences of all ENSCAFG00000012222 retrocopies