Parental gene:

ENSMODG00000018533

Aliases:None
Description:None
Organism:Opossum (Monodelphis domestica)
Coordinates:2:325452047..325456981(-)


>ENSMODG00000018533
ATGGGCAAGGAAAAGACTCATATTAACATCGTCGTCATTGGACACGTAGACTCTGGCAAGTCCACTACTACTGGCCATCT
CATTTACAAATGTGGTGGAATTGATAAGAGGACCATTGAGAAGTTTGAGAAGGAGGCTGCTGAGATGGGAAAGGGCTCCT
TCAAATATGCTTGGGTCTTGGATAAGCTGAAGGCTGAACGTGAGCGTGGTATCACTATTGATATCTCCCTGTGGAAATTT
GAGACCAGCAAGTATTATGTGACCATTATTGATGCTCCGGGACACAGAGACTTTATCAAGAACATGATTACCGGCACATC
TCAGGCTGACTGTGCTGTCCTGATTGTTGCTGCTGGTGTTGGTGAATTTGAAGCTGGCATCTCAAAGAATGGGCAGACCC
GTGAGCATGCCCTTCTGGCCTACACACTAGGTGTGAAACAACTGATTGTTGGCGTCAACAAAATGGATTCCACCGAGCCC
CCCTACAGCCAGAAGAGATATGAGGAAATTGTTAAGGAAGTCAGTACCTACATTAAGAAAATTGGCTACAACCCTGACAC
AGTAGCTTTTGTGCCAATTTCAGGTTGGAATGGTGACAACATGCTGGAGCCAAGCTCCAATATGCCTTGGTTCAAGGGAT
GGAAAGTCACCCGTAAGGATGGCAATGCTAATGGAACAACACTGCTTGAAGCTTTGGATTGCATCCTGCCACCAACTCGT
CCAACTGACAAGCCCCTTCGTTTACCCCTCCAAGATGTCTACAAGATTGGTGGTATTGGTACAGTACCTGTTGGCCGTGT
GGAAACTGGTGTTCTAAAACCAGGAATGGTGGTCACCTTTGCTCCAGTCAATGTTACAACTGAAGTAAAATCTGTTGAAA
TGCACCATGAAGCTTTGAGTGAGGCTCTGCCTGGGGATAATGTTGGTTTCAATGTCAAGAACGTGTCTGTCAAAGATGTC
CGCCGTGGTAATGTTGCTGGTGATAGCAAGAATGACCCACCCATGGAAGCAGCTGGCTTCACTGCACAGGTCATTATCCT
GAACCATCCAGGCCAAATCAGTGCTGGCTATGCACCTGTTCTGGATTGTCACACTGCTCACATTGCCTGCAAATTTGCTG
AACTGAAGGAGAAGATTGATCGTCGTTCTGGCAAGAAGCTGGAAGATGGCCCTAAATTCCTGAAATCTGGTGATGCTGCC
ATCGTTGACATGGTTCCAGGAAAACCCATGTGTGTGGAGAGCTTCTCTGATTATCCTCCTCTGGGTCGTTTTGCTGTTCG
TGATATGAGGCAGACCGTTGCAGTTGGTGTCATCAAGGCAGTTGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACAAAAT
CTGCCCAGAAGGCCCAGAAGGCTAAATGA

Library Parental gene expression (RPM)
SRP007412_brain 0 .00 RPM
SRP007412_cerebellum 0 .00 RPM
SRP007412_heart 0 .00 RPM
SRP007412_kidney 0 .00 RPM
SRP007412_liver 0 .00 RPM
SRP007412_testis 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007786 possible_ortholog 14 retrogenes
Bos taurus ENSBTAG00000014534 possible_ortholog 3 retrogenes
Canis familiaris ENSCAFG00000012222 possible_ortholog 1 retrogene
Canis familiaris ENSCAFG00000013249 possible_ortholog 1 retrogene
Callithrix jacchus ENSCJAG00000010051 possible_ortholog 6 retrogenes
Cavia porcellus ENSCPOG00000004067 possible_ortholog 15 retrogenes
Dipodomys ordii ENSDORG00000009629 possible_ortholog 1 retrogene
Equus caballus ENSECAG00000020363 possible_ortholog 2 retrogenes
Equus caballus ENSECAG00000022260 possible_ortholog 1 retrogene
Erinaceus europaeus ENSEEUG00000000342 possible_ortholog 3 retrogenes
Echinops telfairi ENSETEG00000004236 possible_ortholog 14 retrogenes
Felis catus ENSFCAG00000030977 possible_ortholog 14 retrogenes
Homo sapiens ENSG00000156508 possible_ortholog 27 retrogenes
Gorilla gorilla ENSGGOG00000025675 possible_ortholog 20 retrogenes
Loxodonta africana ENSLAFG00000028081 possible_ortholog 1 retrogene
Microcebus murinus ENSMICG00000015319 possible_ortholog 21 retrogenes
Myotis lucifugus ENSMLUG00000013537 possible_ortholog 24 retrogenes
Macaca mulatta ENSMMUG00000004852 possible_ortholog 15 retrogenes
Mustela putorius furo ENSMPUG00000003816 possible_ortholog 6 retrogenes
Mustela putorius furo ENSMPUG00000004271 possible_ortholog 10 retrogenes
Mus musculus ENSMUSG00000037742 possible_ortholog 15 retrogenes
Nomascus leucogenys ENSNLEG00000001476 possible_ortholog 6 retrogenes
Oryctolagus cuniculus ENSOCUG00000008481 possible_ortholog 3 retrogenes
Otolemur garnettii ENSOGAG00000009152 possible_ortholog 10 retrogenes
Ochotona princeps ENSOPRG00000016685 possible_ortholog 6 retrogenes
Pongo abelii ENSPPYG00000016777 possible_ortholog 1 retrogene
Pan troglodytes ENSPTRG00000018347 possible_ortholog 1 retrogene
Sus scrofa ENSSSCG00000004489 possible_ortholog 4 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000007687 possible_ortholog 4 retrogenes
Tupaia belangeri ENSTBEG00000012151 possible_ortholog 51 retrogenes
Tupaia belangeri ENSTBEG00000017170 possible_ortholog 16 retrogenes
Tursiops truncatus ENSTTRG00000000114 possible_ortholog 19 retrogenes
Vicugna pacos ENSVPAG00000007637 possible_ortholog 9 retrogenes
Drosophila melanogaster FBgn0000557 ortholog_many2many 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mdom_311 83.79 70.35
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2. retro_mdom_792 100.00 98.27
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3. retro_mdom_1053 88.80 53.46
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4. retro_mdom_1146 95.56 53.46
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Download FASTA sequences of all ENSMODG00000018533 retrocopies