Parental gene:

PTS, ENSCAFG00000013915

Aliases:None
Description:6-pyruvoyltetrahydropterin synthase [Source:HGNC Symbol;Acc:9689]
Organism:Dog (Canis familiaris)
Coordinates:5:20891902..20912523(-)


>ENSCAFG00000013915
ATGAGCGGGGAGGGCGGCGGCGGCGGCGGCGGCGGGGGGCGCCGCAGGGCGCGAGTGTCCCGCCTCGTCTCCTTCAGCGC
CACCCACCGACTCCACAGCAAATCTCTGAGTAATGAAGAAAACTTGAAACTGTTTGGGAAATGCAACAATCCAAATGGCC
ATGGGCACAATTATAAAGTTGTGGTGACAGTGCATGGAGAGATTGATCCTGTTACAGGAATGGTTATGAACTTGACCGAC
CTCAAAGAATATATGGAGGAGGCAATTATGAAGCCCCTTGATCACAAGAATCTGGATCTGGATGTACCATACTTTGCAGA
TGTGGTAAGTTTCCTTTCCTACTTCCTCAGCACAGAAGCTCACTTCCCTTCAATGGATGGGCGGTTGCTGTTTCCAACTA
AGGATAAGCCCACGTTGAATTTCACAAAACATGAAGCCGCAAACAAGAAAACGTAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 9 .03 RPM
SRP017611_brain 12 .94 RPM
SRP017611_kidney 19 .02 RPM
SRP017611_liver 4 .21 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003968 ortholog_one2one 3 retrogenes
retro_amel_1001, retro_amel_1480, retro_amel_691,
Bos taurus ENSBTAG00000003770 ortholog_one2one 3 retrogenes
retro_btau_1182, retro_btau_1762, retro_btau_682,
Dasypus novemcinctus ENSDNOG00000014823 ortholog_one2one 1 retrogene
retro_dnov_1747,
Echinops telfairi ENSETEG00000008145 ortholog_one2many 2 retrogenes
retro_etel_1924, retro_etel_2039,
Felis catus ENSFCAG00000024702 ortholog_one2one 3 retrogenes
retro_fcat_1546, retro_fcat_212, retro_fcat_564,
Myotis lucifugus ENSMLUG00000023388 ortholog_one2one 1 retrogene
retro_mluc_946,
Macaca mulatta ENSMMUG00000015255 possible_ortholog 1 retrogene
retro_mmul_995,
Sorex araneus ENSSARG00000001975 ortholog_one2one 2 retrogenes
retro_sara_163, retro_sara_72,
Sus scrofa ENSSSCG00000015040 ortholog_one2one 1 retrogene
retro_sscr_284,
Tursiops truncatus ENSTTRG00000010526 ortholog_one2one 1 retrogene
retro_ttru_1710,
Vicugna pacos ENSVPAG00000000061 ortholog_one2one 1 retrogene
retro_vpac_363,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1386 86.59 54.67
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2. retro_cfam_1859 58.77 75.33
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Download FASTA sequences of all ENSCAFG00000013915 retrocopies