Parental gene:

NECAP1, ENSCAFG00000013930

Aliases:None
Description:NECAP endocytosis associated 1 [Source:HGNC Symbol;Acc:24539]
Organism:Dog (Canis familiaris)
Coordinates:27:37460542..37506942(+)


>ENSCAFG00000013930
ATGGCGGCCGAGTTGGAGTACGAGTCTGTTCTGTGTGTGAAGCCCGACGTTAGCGTCTACCGGATTCCTCCCCGGGCCTC
TAACCGCGGTTACAGGGCATCTGACTGGAAATTAGATCAGCCTGATTGGACTGGTCGCCTCCGAATCACTTCAAAAGGGA
AGATCGCGTATATCAAACTTGAGGATAAAGTTTCAGGGGAACTCTTTGCCCAGGCACCAGTAGAACAATATCCTGGTATT
GCTGTGGAGACAGTGACAGATTCCAGTCGCTACTTTGTAATCCGGATCCAGGATGGTACTGGGCGTAGTGCTTTCATTGG
CATTGGCTTCACAGATCGGGGTGATGCCTTTGACTTTAACGTTTCCTTGCAAGATCACTTCAAGTGGGTAAAGCAGGAAT
CTGAGATTTCCAAAGAATCTCAGGAAATGGACAATCGTCCCAAGTTGGATCTGGGCTTCAAGGAAGGACAGACTATCAAG
TTGAGTATTGGGAACATTACAACCAAGAAGGGAGGTGTTTCTAAGCCCAAGACCACAGGGGCTGGGGGTTTAAGCTTGCT
CCCACCCCCACCTGGAGGCAAAGTCACTATTCCCCCACCATCCTCCTCAGTTGCTATCAGCAATCATGTCACTCCACCAC
CCATTCCAAAATCTAACCATGGAGGTAGTGATGCAGATATCCTCTTAGATTTGGATTCTCCTGCTCCTGTCCCGACATCA
GCACCAGCTCCAGTTTCTGCAAGCAATGACTTGTGGGGAGACTTTAGCACTGCATCCAGCTCTGTTCCAAACCAGGCACC
ACAGCCATCCAACTGGGTCCAGTTCTGA

Library Parental gene expression (RPM)
SRP012049_cerebellum 43 .85 RPM
SRP017611_brain 53 .27 RPM
SRP017611_kidney 15 .52 RPM
SRP017611_liver 5 .87 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016989 ortholog_one2one 1 retrogene
retro_amel_1016,
Canis familiaris ENSCAFG00000015895 within_species_paralog 1 retrogene
retro_cfam_1864,
Choloepus hoffmanni ENSCHOG00000008087 ortholog_one2one 3 retrogenes
retro_chof_1692, retro_chof_1818, retro_chof_1913,
Dasypus novemcinctus ENSDNOG00000014778 ortholog_one2one 2 retrogenes
retro_dnov_613, retro_dnov_986,
Homo sapiens ENSG00000089818 ortholog_one2one 1 retrogene
retro_hsap_3839,
Gorilla gorilla ENSGGOG00000010233 ortholog_one2one 1 retrogene
retro_ggor_2585,
Loxodonta africana ENSLAFG00000002979 ortholog_one2one 1 retrogene
retro_lafr_632,
Mustela putorius furo ENSMPUG00000016742 ortholog_one2one 1 retrogene
retro_mputfur_361,
Nomascus leucogenys ENSNLEG00000001743 ortholog_one2one 1 retrogene
retro_nleu_1974,
Otolemur garnettii ENSOGAG00000006358 ortholog_one2one 1 retrogene
retro_ogar_3442,
Pongo abelii ENSPPYG00000004238 ortholog_one2one 1 retrogene
retro_pabe_3059,
Pan troglodytes ENSPTRG00000023277 ortholog_one2one 1 retrogene
retro_ptro_2615,
Rattus norvegicus ENSRNOG00000009236 ortholog_one2one 1 retrogene
retro_rnor_1806,
Ictidomys tridecemlineatus ENSSTOG00000010153 ortholog_one2one 2 retrogenes
retro_itri_1107, retro_itri_740,
Tursiops truncatus ENSTTRG00000014260 ortholog_one2one 1 retrogene
retro_ttru_1035,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_780 57.71 80.59
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Download FASTA sequences of all ENSCAFG00000013930 retrocopies